PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118865.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 272aa    MW: 31442.8 Da    PI: 5.0582
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.8e-192168148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv+ v+ +G  +W+ Iar  g++Rt+k+c++rw++yl
   XP_009118865.1 21 KGPWTEEEDAILVNFVAIHGDARWNHIARSSGLKRTGKSCRLRWLNYL 68
                     79********************************************97 PP

2Myb_DNA-binding46.86.9e-1574117146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE+  +++++ ++G++ W++Ia++++ gRt++++k++w++
   XP_009118865.1  74 RGNITLEEQFMILKLHSLWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117
                      7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.1241672IPR017930Myb domain
SuperFamilySSF466891.12E-3018115IPR009057Homeodomain-like
SMARTSM007173.1E-162070IPR001005SANT/Myb domain
PfamPF002498.8E-172168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-222275IPR009057Homeodomain-like
CDDcd001671.60E-122368No hitNo description
PROSITE profilePS5129418.09873123IPR017930Myb domain
SMARTSM007171.1E-1373121IPR001005SANT/Myb domain
PfamPF002491.7E-1374117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2276122IPR009057Homeodomain-like
CDDcd001672.85E-1078117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MENYEQNLNS PAHEEDSDVR KGPWTEEEDA ILVNFVAIHG DARWNHIARS SGLKRTGKSC  60
RLRWLNYLRP DVRRGNITLE EQFMILKLHS LWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ  120
KQAKHLRCDV NSNLFKETMK NVWMPRLMER INAQTPSPTY DPVESVITDP GQPIDKQTPV  180
EPGFVLNPDQ HRHQFVQASE LCATSSNSPA ETLSDVQDRV VNGSGYDPAG QTGFLELNDW  240
GCDDGDNVWT DDESFWFLQD QLCHETTSFS YN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25181234108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118865.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1441910.0KJ144191.1 Brassica rapa subsp. chinensis MYB transcription factor (MYB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009118865.10.0PREDICTED: transcription factor MYB108
SwissprotQ10MB43e-74MYB2_ORYSJ; Transcription factor MYB2
TrEMBLM4DXZ30.0M4DXZ3_BRARP; Uncharacterized protein
STRINGBra021389.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.11e-171myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]