PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009118596.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 378aa    MW: 43399.6 Da    PI: 6.1899
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009118596.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.58.9e-06647337
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                     ++C++++  ++  +C++    +C +C  + H++       H
  XP_009118596.1  6 SPMCDHCNMGKAVVYCKTHLARICSQCDRKLHHYvtmdspdH 47
                    579*****977********************96655555555 PP
2CCT54.73.6e-19314357144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a++RY eK+k+RkF KkirYesRK  A++++R+KGrF+k++
  XP_009118596.1 314 RLEAKKRYLEKKKKRKFGKKIRYESRKSSADTKKRLKGRFTKAD 357
                     7899*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.3452IPR000315B-box-type zinc finger
CDDcd000211.10E-4752No hitNo description
PfamPF062031.0E-14314356IPR010402CCT domain
PROSITE profilePS5101713.652314356IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MHIMSSPMCD HCNMGKAVVY CKTHLARICS QCDRKLHHYV TMDSPDHSRL LLCEKCVSQA  60
ADVQCLEQGL CLCQTCVPNA TVTSRFPFCN VSNNHSGYSF PRDLDLDSFS SSLSSSLTDL  120
SWGYHFVPLS PKNGDSSSSS SVIFQNFDNH TKNNSDQRGQ MLQPDYMDNS KDFSYSGLEG  180
YETKDIENVW LNNFDDNKGV LLDQKEYLYR EELILTDQLI DAIMKHNDEI TTEVIHTDYN  240
IEALGNASCE DSNTNQMIQS KAKEETNNNV GILFPNAHIH DECRPSQLIL TDVDEMLPWD  300
DQLLESPIYT PQYRLEAKKR YLEKKKKRKF GKKIRYESRK SSADTKKRLK GRFTKADAEY  360
DYDPRANNTT KEVYKTKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323328KKKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009118596.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716396.10.0putative zinc finger protein CONSTANS-LIKE 11 isoform X1
TrEMBLM4EUI90.0M4EUI9_BRARP; Uncharacterized protein
STRINGBra032471.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1355245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.11e-14B-box type zinc finger protein with CCT domain