PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009118406.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

LBD

Protein Properties

Length: 207aa MW: 23134.3 Da PI: 4.5969

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009118406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.4	4.5e-42	32	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r da++slvyeAear+rdPvyG++g i +lq+q+++l+aela XP_009118406.1 32 PCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVFGASNIIKLLQELPESQRIDAVKSLVYEAEARIRDPVYGSTGAIYNLQRQVSELQAELA 126 7********************************************************************************************** PP DUF260 96 llkee 100 +++ e XP_009118406.1 127 KAQVE 131 99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.341	31	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-41	32	129	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MPDMESKGDA SAAIIYASPA SSPPPPRVVL SPCAACKILR RRCGEKCVLA PYFPPTEPAK 60 FSIAHRVFGA SNIIKLLQEL PESQRIDAVK SLVYEAEARI RDPVYGSTGA IYNLQRQVSE 120 LQAELAKAQV EIVSMQFQRS NLLELINNMD QPNQDQHKMM AFESSLGNCE HDEFISSSDE 180 ESNDFGFLED KYFNTNSLML WCDPLLI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-42	31	133	10	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-42	31	133	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009118406.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009118406.1	1e-153	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	7e-91	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A291LQX8	1e-152	A0A291LQX8_BRARR; Transcription factor LBD1
TrEMBL	A0A397YAJ3	1e-152	A0A397YAJ3_BRACM; Uncharacterized protein
TrEMBL	M4ES21	1e-152	M4ES21_BRARP; Uncharacterized protein
STRING	Bra031599.1-P	1e-153	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-91	LOB domain-containing protein 1