PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009118332.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | NF-YC | ||||||||
Protein Properties | Length: 228aa MW: 25421.5 Da PI: 4.8893 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179 | 4.3e-56 | 55 | 158 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fwe+q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtdifdfl XP_009118332.1 55 QLQVFWENQfkeIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFL 149 89******99999********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_009118332.1 150 VDIVPREDL 158 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.18E-32 | 45 | 149 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.7E-38 | 69 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.7E-22 | 77 | 140 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MDQQEHAQSG AMNYGSNPYQ TNPMTTTSAG PAAPPGQLGF HQIHQQQQQQ QLAQQLQVFW 60 ENQFKEIEKT TDFKNHSLPL ARIKKIMKAD EDVRMISAEA PVVFARACEM FILELTLRSW 120 NHTEENKRRT LQKNDIAAAV TRTDIFDFLV DIVPREDLRD EVLGSIPRGT VPEAAAAGYP 180 YGYLPAGTAP IGNPGMVMGN PGGAYPPNPY MGQPMWQQQG PDQPDQEN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-64 | 62 | 155 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 133 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.1351 | 0.0 | bud| flower| leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11867211, ECO:0000269|PubMed:17322342}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009118332.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC797144 | 0.0 | KC797144.1 Brassica napus transcription factor subunit NF-YC9A (NF-YC9A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009118332.1 | 1e-171 | PREDICTED: nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_013672609.1 | 1e-171 | nuclear transcription factor Y subunit C-9 | ||||
Refseq | XP_022547296.1 | 1e-171 | nuclear transcription factor Y subunit C-9 | ||||
Swissprot | Q8L4B2 | 1e-138 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A397Y5A6 | 1e-169 | A0A397Y5A6_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3N6S731 | 1e-169 | A0A3N6S731_BRACR; Uncharacterized protein | ||||
TrEMBL | M4ES73 | 1e-169 | M4ES73_BRARP; Uncharacterized protein | ||||
TrEMBL | W8EDQ7 | 1e-169 | W8EDQ7_BRANA; Transcription factor subunit NF-YC9A | ||||
STRING | Bra031651.1-P | 1e-170 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 3e-95 | nuclear factor Y, subunit C9 |