PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117949.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 480aa    MW: 51906.5 Da    PI: 8.3042
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1092.2e-34219275259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgsefprsYY+Ct +gCpvkkkvers  d++v+ei+Y+g+Hnhe
  XP_009117949.1 219 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSL-DGQVTEIIYKGQHNHE 275
                     8****************************************.***************8 PP
2WRKY105.52.7e-33379437159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC v+k+ver+a dpk+v++tYeg+Hnh+
  XP_009117949.1 379 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCGVRKHVERAAADPKAVVTTYEGKHNHD 437
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-30206277IPR003657WRKY domain
SuperFamilySSF1182902.35E-26217277IPR003657WRKY domain
SMARTSM007746.6E-39218276IPR003657WRKY domain
PfamPF031062.0E-26219275IPR003657WRKY domain
PROSITE profilePS5081124.857219277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-36364439IPR003657WRKY domain
SuperFamilySSF1182901.26E-29371439IPR003657WRKY domain
PROSITE profilePS5081138.113374439IPR003657WRKY domain
SMARTSM007741.4E-39379438IPR003657WRKY domain
PfamPF031065.7E-26380437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MSEKEELPST SKSTGAPSRP TLSLPPRPFS DMFFSAGVGF SPGPMTLVSN MFPESDEFRS  60
FSQLLAGAMA SPAAAAAASA GAASEEGNNS SSGGDVDPRF KQSRPTGLMI SQSPSMFTVP  120
PGLSPAMRLD SPSFLGLFSP IQGSYGMTHQ QALAQVTAQA VQANANMQPQ TEYPHSSQAQ  180
PFSSSAPDSS LLAPIETSIT TIIEQRSQQQ PLNVDKPADD GYNWRKYGQK QVKGSEFPRS  240
YYKCTNPGCP VKKKVERSLD GQVTEIIYKG QHNHEPPQNT KRGNNNKDSN LNGSLVNNNK  300
SKREQHEAAS QATTTEQMSE ASDSEEVGNG ESGVRERAED EPDAKKVRVS EPAAAVSTSH  360
RTVTEPKIIV QTTSEVDLLD DGYRWRKYGQ KVVKGNPYPR SYYKCTTQGC GVRKHVERAA  420
ADPKAVVTTY EGKHNHDLPA SKSSSHATAA AAQLRPENRH GGSANQQPVA RLRLKEEHII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-44219440878Probable WRKY transcription factor 4
2lex_A1e-44219440878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117949.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931610.0KM593161.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY94) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117949.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI900.0WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLM4EDK90.0M4EDK9_BRARP; Uncharacterized protein
STRINGBra026869.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.10.0WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]