PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117462.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 311aa    MW: 35809.1 Da    PI: 7.4318
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18165215256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ta+eAa a+++ + kl+ge
  XP_009117462.1 165 LYRGVRQRH-WGKWVAEIRKPRN---RTRLWLGTFDTAKEAAMAYDREAFKLRGE 215
                     59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-33164224No hitNo description
SuperFamilySSF541714.58E-23165223IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-32165223IPR001471AP2/ERF domain
SMARTSM003806.2E-40165228IPR001471AP2/ERF domain
PROSITE profilePS5103222.748165222IPR001471AP2/ERF domain
PRINTSPR003678.9E-11166177IPR001471AP2/ERF domain
PfamPF008472.0E-13166215IPR001471AP2/ERF domain
PRINTSPR003678.9E-11188204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MATAKNKGKS IMSFCTSEVE KMDHEMESEE ALQFKSKDNS VSGTDMWKPF VGETSSTLSQ  60
RSLRKIRTID RHNHPYLLSS SYVTPDQPPP PTTAFPFSLA PSNIQNQQLF SYPRQMISFG  120
PQHQVHPFLN AHQQHMMQYW RDILNLPLPL QLARPVIQPF SATKLYRGVR QRHWGKWVAE  180
IRKPRNRTRL WLGTFDTAKE AAMAYDREAF KLRGETARLN FPELFLNKQE STPLHQKQPE  240
TPAAAEANER GNDDSSVAVG GVSDDTGWAE AWFNAIPEEW GQGSPLWDDY HFPISYNQKE  300
DHEQDQPPRQ K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-20164222463ATERF1
3gcc_A9e-20164222463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117462.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117462.10.0PREDICTED: ethylene-responsive transcription factor ERF053
RefseqXP_013660129.10.0ethylene-responsive transcription factor ERF053
SwissprotQ9SKT11e-117ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A078JQW70.0A0A078JQW7_BRANA; BnaAnng29660D protein
TrEMBLA0A397Y3F80.0A0A397Y3F8_BRACM; Uncharacterized protein
TrEMBLM4EQS30.0M4EQS3_BRARP; Uncharacterized protein
STRINGBra031146.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-118ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]