PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117105.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 664aa    MW: 74681.5 Da    PI: 7.3985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.7e-111199197
                    EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ff +l+p   + ++ l++p +f++++ +g +  + t  l++ +s r+W+vk+       + +l++GW+eF+ a+ L++g  ++ +++g++ f  +v+
  XP_009117105.1 11 FFHTLVPGCGFHTH-LIIPLDFFSKYiEGRSV-DNTAHLKSgSSDRTWQVKM------AGPILSDGWREFAVAHSLQAGHLILVRYEGDMVF--HVT 97
                    66677776677777.***********855544.458999996777*******......4568*************************99999..776 PP

                    EE CS
              B3 96 vf 97
                     +
  XP_009117105.1 98 DC 99
                    55 PP
2B368.59.5e-221552371196
                     HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     l  + l+lp +f++++g+  +es +++l d +g+sW++ ++++ +s+++++t+GW++F+++ng ++g f++Fkl+g+ e+  +v  
  XP_009117105.1 155 LLIDTLYLPQHFTSSNGLT-RESHKIVLLDGEGKSWTLDMRFNESSDTFYMTRGWRSFCEENGQEAGGFFTFKLVGNGET--TVLS 237
                     455789**********998.5677***************************************************97444..3433 PP
3B356.64.9e-18296386197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f++ ++p+d ++  rl+lpk+f++e+g++k++  ++ l d++g +W   l  r k+g + l+kGWkeFvk+ngL +g +  +kl++ +++++ ++
  XP_009117105.1 296 FLTFTLPPDCFRIERLSLPKQFLRENGINKPG--EICLLDKDGMKWPTSL-LRDKKGIMSLGKGWKEFVKSNGLASGFT--LKLIW-EDTTPAFS 384
                     677889*********************99766..8***************.455555689****************955..55557.56666666 PP

                     EE CS
              B3  96 vf 97 
                     ++
  XP_009117105.1 385 LC 386
                     55 PP
4B3551.5e-17434525499
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     + +++d l+ +r++lpk+f+ e +++k++   + l  ++  +W+ kl ++ ++gr+ l++GW  F++ang k+g++v+++ ++ ++++++++++r
  XP_009117105.1 434 IKIRPDLLTCNRMRLPKQFVMESNMNKPG--VIYLLGKDDTKWTTKL-VKERDGRMKLGSGWTVFAEANGFKTGESVTLESIW-EDGTPMIRFLR 524
                     6678999************9888878655..7***************.67788889************************999.9999***9998 PP

                     S CS
              B3  99 k 99 
                     +
  XP_009117105.1 525 T 525
                     6 PP
5B337.15.7e-12563651597
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                     l+p+dv +   l++p + +e++g +k +  ++t+  e+  + + +l    ++g++ l++GW eF++ang+k g++++++++++ ++++ v+k++
  XP_009117105.1 563 LLPEDVKAG-VLIIPSQLLEANGVNKLG--KITILGENKMELSGYL--LSRGGTVALENGWGEFCEANGVKLGESFTLEFIKKpDKTTHVFKFC 651
                     566666665.5***********988765..6888887777777777..899999***************************9978887777777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.53E-12897IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-14897IPR015300DNA-binding pseudobarrel domain
CDDcd100172.44E-129100No hitNo description
PROSITE profilePS5086310.2510102IPR003340B3 DNA binding domain
SMARTSM010192.2E-1611102IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-23138241IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-22139241IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.144145241IPR003340B3 DNA binding domain
CDDcd100175.00E-19145240No hitNo description
SMARTSM010193.1E-28146242IPR003340B3 DNA binding domain
PfamPF023626.1E-20150236IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-17292378IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-16294387No hitNo description
Gene3DG3DSA:2.40.330.102.1E-17295378IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.422296389IPR003340B3 DNA binding domain
SMARTSM010196.8E-26296389IPR003340B3 DNA binding domain
PfamPF023622.9E-17296386IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.5E-18421530IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-18427527IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-22431526IPR003340B3 DNA binding domain
PROSITE profilePS5086313.07431526IPR003340B3 DNA binding domain
PfamPF023627.9E-16432524IPR003340B3 DNA binding domain
CDDcd100171.26E-16439524No hitNo description
Gene3DG3DSA:2.40.330.102.9E-14551651IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-14556651IPR015300DNA-binding pseudobarrel domain
CDDcd100174.29E-8557649No hitNo description
SMARTSM010191.8E-14558654IPR003340B3 DNA binding domain
PROSITE profilePS508639.714558653IPR003340B3 DNA binding domain
PfamPF023629.4E-11561652IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAKSTLLHPQ FFHTLVPGCG FHTHLIIPLD FFSKYIEGRS VDNTAHLKSG SSDRTWQVKM  60
AGPILSDGWR EFAVAHSLQA GHLILVRYEG DMVFHVTDCR EIPSNNNKHS HPRIDDDDVP  120
KKKKKRAKTN SNETEADSSS LDNSCFVATV TAFNLLIDTL YLPQHFTSSN GLTRESHKIV  180
LLDGEGKSWT LDMRFNESSD TFYMTRGWRS FCEENGQEAG GFFTFKLVGN GETTVLSFRP  240
TESISSTMQR DSSQEEDTEW ESDEDEPLMQ TENKKKCNPK RRAVPYSSYS PCHKRFLTFT  300
LPPDCFRIER LSLPKQFLRE NGINKPGEIC LLDKDGMKWP TSLLRDKKGI MSLGKGWKEF  360
VKSNGLASGF TLKLIWEDTT PAFSLCCPES TSDKEQQEYF KHIKKQSLYI DPSNNGDNSS  420
KDSSPSSHNP LVTIKIRPDL LTCNRMRLPK QFVMESNMNK PGVIYLLGKD DTKWTTKLVK  480
ERDGRMKLGS GWTVFAEANG FKTGESVTLE SIWEDGTPMI RFLRTGSNSS ETKKNESVST  540
EVTEPKTSGS SSEIHDRFVT LTLLPEDVKA GVLIIPSQLL EANGVNKLGK ITILGENKME  600
LSGYLLSRGG TVALENGWGE FCEANGVKLG ESFTLEFIKK PDKTTHVFKF CSIGRLTNSH  660
QNVN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117105.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117105.10.0PREDICTED: B3 domain-containing protein REM13-like
SwissprotP0CAP50.0REM13_ARATH; B3 domain-containing protein REM13
TrEMBLA0A3P5Y7T50.0A0A3P5Y7T5_BRACM; Uncharacterized protein
STRINGBra007836.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137801326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24650.11e-171DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Bindschedler LV,Palmblad M,Cramer R
    Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study.
    Phytochemistry, 2008. 69(10): p. 1962-72
    [PMID:18538804]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]