PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009117102.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 513aa    MW: 59017.9 Da    PI: 8.9676
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009117102.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.1e-1518951095
                    HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     ++++ l +p  f+ +h  k +++kt +l++ +s  +W+vkl  ++++    +++GW+ F+ a++L++gD+vvF+++g+  f  +v+
  XP_009117102.1 18 GFTKH-LDIPVAFFLKHLDKRNKGKTAKLRSdTSETTWNVKL--DGRR----FSDGWEYFAVAHDLRVGDIVVFRHEGELAF--HVT 95
                    55666.99*********777789999***997888*******..9998....9**********************8775544..655 PP
2B3573.4e-18146237296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     f +++++++l+++ ++lpk fa  + +   ++++++l +e+ +sW+++l+ + + gr+++++GW++F+ ang k  D+++Fk+++ +e+++v+k+
  XP_009117102.1 146 FVITVTPSNLRRDTVYLPKAFAVVNCLM--KKFEIVLVNEERESWKLNLRQDSYLGRFYMSNGWRSFCVANGKKPEDMFTFKMVQ-NETTPVLKL 237
                     4677899***************999544..4579************************************************998.566677776 PP
3B371.21.3e-22267357497
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     + +++++ +++ ++lpk+fa+++g+k  +++++ l++e+g+sW++ l+++ +sgr+++++GW++F+ ang k gD++ Fkl++ + +++v+k+f
  XP_009117102.1 267 AIVTASNIRRDTMYLPKTFAASNGLK--SKFKIDLMNEKGESWTIDLRHEPYSGRFLIRSGWRSFCAANGKKPGDMFNFKLIR-NVETPVLKLF 357
                     56789999****************99..7789**************************************************9.5666788877 PP
4B350.24.8e-164275101297
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     +++ l lp +f++ +g+kk+e  ++++ d+ g +W+  l + +kk+g++ l+kG k+F++ ng++ g+++v++l++ +++ +v+k++
  XP_009117102.1 427 TTSKLNLPLEFTKGNGIKKAE--KIKMIDRYGTTWSTSLLMnKKKRGEMKLGKGCKGFCEVNGVRMGESFVLELVW-EDTVPVLKFC 510
                     455699**********99877..7***************994555555***************************9.7777888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-215102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-206106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.118100IPR003340B3 DNA binding domain
CDDcd100175.82E-16995No hitNo description
SMARTSM010193.9E-2011100IPR003340B3 DNA binding domain
PfamPF023622.6E-92289IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19139236IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-19140236IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.985145241IPR003340B3 DNA binding domain
SMARTSM010191.3E-21145241IPR003340B3 DNA binding domain
CDDcd100172.54E-15145239No hitNo description
PfamPF023626.4E-17146237IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-21262355IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20264356IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.804264360IPR003340B3 DNA binding domain
CDDcd100173.62E-18264358No hitNo description
SMARTSM010191.4E-29265360IPR003340B3 DNA binding domain
PfamPF023629.6E-21267357IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.9E-16415512IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-16416512IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.77416512IPR003340B3 DNA binding domain
SMARTSM010191.7E-19421513IPR003340B3 DNA binding domain
CDDcd100172.29E-11421510No hitNo description
PfamPF023627.9E-14427510IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MALCSPTNPH FFQPLLPGFT KHLDIPVAFF LKHLDKRNKG KTAKLRSDTS ETTWNVKLDG  60
RRFSDGWEYF AVAHDLRVGD IVVFRHEGEL AFHVTALGPS CCEIQYGEDS QEEDKSGELC  120
DAMEEISRKK KRPKTEIDFS KDQSCFVITV TPSNLRRDTV YLPKAFAVVN CLMKKFEIVL  180
VNEERESWKL NLRQDSYLGR FYMSNGWRSF CVANGKKPED MFTFKMVQNE TTPVLKLLPW  240
NNEDLHNPEK VPKKKHQEIE ADSSFVAIVT ASNIRRDTMY LPKTFAASNG LKSKFKIDLM  300
NEKGESWTID LRHEPYSGRF LIRSGWRSFC AANGKKPGDM FNFKLIRNVE TPVLKLFPLN  360
LPKLEPSEDT RQGLEATERE FLGVETNRDD SRQEAIRKGK WLEANEITIK EENISTTENR  420
FVTLTLTTSK LNLPLEFTKG NGIKKAEKIK MIDRYGTTWS TSLLMNKKKR GEMKLGKGCK  480
GFCEVNGVRM GESFVLELVW EDTVPVLKFC YKC
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009117102.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009117102.10.0PREDICTED: B3 domain-containing protein REM10
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLA0A397Y2Q00.0A0A397Y2Q0_BRACM; Uncharacterized protein
STRINGBo8g099610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]