PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116868.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 292aa    MW: 32954.9 Da    PI: 7.7523
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3101.45.1e-3222125199
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+kv tpsdv+k++rlv+pk++ae++     ++ ++++  l +ed++g sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++d  ++ 
  XP_009116868.1  22 FDKVVTPSDVGKLNRLVIPKQHAERYfpldnSSTNNKGLLLDFEDRTGSSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRDPCNKD 116
                     89***************************99556668889************************************************8744777 PP

                     ..EEEEE-S CS
              B3  91 elvvkvfrk 99 
                     +l++ ++r+
  XP_009116868.1 117 KLYIDWRRR 125
                     799999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4211131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-3220128IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-2521114No hitNo description
SMARTSM010196.1E-2422126IPR003340B3 DNA binding domain
PROSITE profilePS5086314.35322126IPR003340B3 DNA binding domain
PfamPF023623.7E-2922125IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MNQENKKPLE EASTSMEREN MFDKVVTPSD VGKLNRLVIP KQHAERYFPL DNSSTNNKGL  60
LLDFEDRTGS SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR DPCNKDKLYI  120
DWRRRPKIPD HHQFAGAMFP RFYSFPHPQM PTSFESSHNL YHHRFQRDLG IGYYPTAVIE  180
SVPVIMQRRE AQVANMASSR GEKRLRLFGV DVECGGGGGG SVNSTEEESS SSGGSMSRGG  240
VSMAGVGSLL QLRLVSSDDE SLVAMEGATV DEDHHLFTTK KGKSSLSFDL DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-61171283116B3 domain-containing transcription factor NGA1
5os9_B1e-61171283116B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.37011e-69leaf| root
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116868.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1728770.0AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116868.10.0PREDICTED: B3 domain-containing transcription factor NGA2
SwissprotQ9M2681e-168NGA2_ARATH; B3 domain-containing transcription factor NGA2
TrEMBLA0A3P5Y7060.0A0A3P5Y706_BRACM; Uncharacterized protein
TrEMBLM4CTV20.0M4CTV2_BRARP; Uncharacterized protein
STRINGBra007646.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.11e-147B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]