PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009116864.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 307aa MW: 35376.1 Da PI: 8.1494

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009116864.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.4	2.6e-13	149	197	1	52
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIk 52 +r +h ++Er+RR+++N+ ++ Lr+llP++ + ++ + a+i+ A++Y k XP_009116864.1 149 QRINHIAVERNRRRQMNEHISSLRSLLPPS---YIQRGDQASIVGGAINYAK 197 699*************************...9**************66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.19E-16	147	216	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.73E-10	147	204	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-12	148	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.294	148	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-10	149	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-9	154	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MERFQGHINP SFAEAQSFAF KEEEEEESMQ DTVPFLQMLQ SEEDPLPFTS FKELLSLQNL 60 HNHWELQSYL SHNETNPVST SSMEVTRQAL SSQELPFSRQ QDMTVPSSSS TPNSRRKRKI 120 ITNPPEVTRG KRKRRKTKPS KDIEEIENQR INHIAVERNR RRQMNEHISS LRSLLPPSYI 180 QRGDQASIVG GAINYAKVLE QVIQSLELQR RTKQSCEVEN RVTCVPRIEA TLIQNHVNLK 240 VECRKKQGQL LKGIVSLEKL RLTVLHLNIS SLSCSSVSYC FNLKMEDDCK LESAEEITKV 300 AHQIFDT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	135	KRKIITNPPEVTRGKRKRRK
2	130	135	KRKRRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009116864.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116864.1	0.0	PREDICTED: transcription factor bHLH67
Swissprot	Q700E4	1e-120	BH067_ARATH; Transcription factor bHLH67
TrEMBL	A0A397Y7J1	0.0	A0A397Y7J1_BRACM; Uncharacterized protein
STRING	Bra007644.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3119	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61950.1	1e-109	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development. J. Exp. Bot., 2015. 66(5): p. 1543-52 [PMID:25582452]