PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009116850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 315aa MW: 34902.6 Da PI: 9.6666 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.5 | 1.3e-37 | 60 | 120 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+ tntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss XP_009116850.1 60 PQEKVNCPRCNPTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 120 6899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 59 | 118 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-31 | 62 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.239 | 64 | 118 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 66 | 102 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MINVKPMDQM ISNTNNNTSQ QQQPTFITTT TRPNATAANG GSGGNNNNTA ATMETRKARP 60 QEKVNCPRCN PTNTKFCYYN NYSLTQPRYF CKGCRRYWTE GGSLRNVPVG GSSRKNKRSS 120 TPLPSHSNPK LPDLNPPILF SSQIPNKSSK DLNLLSFPVM QDHHHGMSQF LHMPKIENNN 180 TSSSIYASSS PVSALELLRS NGVSSRGMNT FLPGQMMDSN SVIYSSLGFP TMVDYKQSNN 240 NLSFSIDHHQ GIGNNTINSN QRTEDNNHTD DMNGASRILF PFSDMKELSS TTQDKSHGNN 300 TYWSGMFTNT GGSSW |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009116850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979481 | 0.0 | JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116849.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7 isoform X2 | ||||
Refseq | XP_009116850.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7 isoform X3 | ||||
Swissprot | Q43385 | 1e-178 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A397Y9N1 | 0.0 | A0A397Y9N1_BRACM; Uncharacterized protein | ||||
STRING | Bra007632.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 1e-173 | Dof family protein |