PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009116849.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 324aa MW: 35993.8 Da PI: 9.5063 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.4 | 1.3e-37 | 69 | 129 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++++cprC+ tntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss XP_009116849.1 69 PQEKVNCPRCNPTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 129 6899******************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 68 | 127 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-31 | 71 | 127 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.239 | 73 | 127 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 75 | 111 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009639 | Biological Process | response to red or far red light | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
MDATKWTQEM INVKPMDQMI SNTNNNTSQQ QQPTFITTTT RPNATAANGG SGGNNNNTAA 60 TMETRKARPQ EKVNCPRCNP TNTKFCYYNN YSLTQPRYFC KGCRRYWTEG GSLRNVPVGG 120 SSRKNKRSST PLPSHSNPKL PDLNPPILFS SQIPNKSSKD LNLLSFPVMQ DHHHGMSQFL 180 HMPKIENNNT SSSIYASSSP VSALELLRSN GVSSRGMNTF LPGQMMDSNS VIYSSLGFPT 240 MVDYKQSNNN LSFSIDHHQG IGNNTINSNQ RTEDNNHTDD MNGASRILFP FSDMKELSST 300 TQDKSHGNNT YWSGMFTNTG GSSW |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009116849.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979481 | 0.0 | JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116849.1 | 0.0 | PREDICTED: dof zinc finger protein DOF3.7 isoform X2 | ||||
Swissprot | Q43385 | 0.0 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A397Y9N1 | 0.0 | A0A397Y9N1_BRACM; Uncharacterized protein | ||||
STRING | Bra007632.1-P | 0.0 | (Brassica rapa) | ||||
STRING | Bo8g097330.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 1e-179 | Dof family protein |