PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116848.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 327aa    MW: 36326.2 Da    PI: 9.5063
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.41.3e-3772132262
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                     ++++++cprC+ tntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss
  XP_009116848.1  72 PQEKVNCPRCNPTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 132
                     6899******************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2971130IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3174130IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.23976130IPR003851Zinc finger, Dof-type
PROSITE patternPS01361078114IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDATKWTQGF QEMINVKPMD QMISNTNNNT SQQQQPTFIT TTTRPNATAA NGGSGGNNNN  60
TAATMETRKA RPQEKVNCPR CNPTNTKFCY YNNYSLTQPR YFCKGCRRYW TEGGSLRNVP  120
VGGSSRKNKR SSTPLPSHSN PKLPDLNPPI LFSSQIPNKS SKDLNLLSFP VMQDHHHGMS  180
QFLHMPKIEN NNTSSSIYAS SSPVSALELL RSNGVSSRGM NTFLPGQMMD SNSVIYSSLG  240
FPTMVDYKQS NNNLSFSIDH HQGIGNNTIN SNQRTEDNNH TDDMNGASRI LFPFSDMKEL  300
SSTTQDKSHG NNTYWSGMFT NTGGSSW
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116848.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9794810.0JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116848.10.0PREDICTED: dof zinc finger protein DOF3.7 isoform X1
SwissprotQ433850.0DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLA0A078J5990.0A0A078J599_BRANA; BnaA09g55570D protein
TrEMBLA0A397Y9N10.0A0A397Y9N1_BRACM; Uncharacterized protein
STRINGBra007632.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.40.0Dof family protein