PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009116759.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | HB-other | ||||||||
Protein Properties | Length: 228aa MW: 26261.2 Da PI: 8.7563 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 44.1 | 3.6e-14 | 123 | 175 | 1 | 53 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++ + +t++q+++Le+ F+++ +p+ ++r +L+++lgL rq+k+ FqN R+ XP_009116759.1 123 KKRYHHHTAQQIQRLESSFKECLHPDDKQRNQLSRELGLAPRQIKFRFQNIRT 175 5778899*******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-16 | 108 | 174 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.48E-14 | 108 | 177 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.973 | 120 | 180 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.2E-9 | 121 | 184 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-11 | 123 | 177 | No hit | No description |
Pfam | PF00046 | 1.2E-11 | 123 | 175 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MYYLDCTNGE LCSLCLAHHK DLLTIQSKCV LAIILISFFG WLCYVVRFCL CIDWFWQIGR 60 SLGLYRSISI ACHSSWIHNL TIFYPSSNQR ISTYKKGCLE KVIGGDSGGG SQHHYGTETH 120 RKKKRYHHHT AQQIQRLESS FKECLHPDDK QRNQLSRELG LAPRQIKFRF QNIRTQLNAQ 180 HERADNNALE AEKDKIRCEN IAIREALKHA ICPNCGGPPV NACLFQLN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009116759.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ182489 | 1e-131 | DQ182489.1 Brassica napus baby boom interacting protein 1B mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116759.1 | 1e-171 | PREDICTED: homeobox-leucine zipper protein HDG11-like | ||||
Refseq | XP_009116760.1 | 1e-171 | PREDICTED: homeobox-leucine zipper protein HDG11-like | ||||
TrEMBL | M4CTL8 | 1e-170 | M4CTL8_BRARP; Uncharacterized protein | ||||
STRING | Bra007562.1-P | 1e-171 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM491 | 28 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-54 | homeodomain GLABROUS 11 |