PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116657.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family FAR1
Protein Properties Length: 897aa    MW: 102845 Da    PI: 6.8333
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.71.4e-2198183390
            FAR1   3 YneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     Y++YA + GF++rk++ +k+ k+++++ +  +vCskeg r+e k +   ++ tr+ tr+gCka++   ++++g++++ +++++HnH+l+
  XP_009116657.1  98 YSKYAGNHGFNIRKQRRTKKkKDDEKVARILYVCSKEGVRKEPKVN---RSYTRPITRCGCKAHMACYLQSSGRYRIVSFNQNHNHDLV 183
                     9*************99888746677889999***********9888...999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1898183IPR004330FAR1 DNA binding domain
PfamPF105512.7E-33305397IPR018289MULE transposase domain
PROSITE profilePS509669.631585621IPR007527Zinc finger, SWIM-type
PfamPF044346.3E-5595621IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-4596623IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MENNQKSGQE AVLGGQCESS LQVSGDLTLI NQKSVEIFVE EDDISLGESE EDYELANKED  60
LLETEDIDAL EANNENEKKD ELCIGMEFSS EDTAHMAYSK YAGNHGFNIR KQRRTKKKKD  120
DEKVARILYV CSKEGVRKEP KVNRSYTRPI TRCGCKAHMA CYLQSSGRYR IVSFNQNHNH  180
DLVRTPMKHL LKGNRAVTVS QKQHADDAEM SGISAKATIE MMSREVGGRE NLGFLDKDYR  240
NYICRKRMAE MEKGDAGAVL EYFQKKKEDN SSFFYSMQLD KDDMITNIFW VDDRSISDYN  300
LFGDVVCFDT TYKTNEYDRP FAPFVGVNHH KQTVVFGAAL LYDETTESFK WLFETFLGAM  360
SGKQPKTILT DQSAAMANAI VKVFPETIHR LCVWPIYVNA AKNLSRVFHG PDQFAMDFGK  420
CVYDHEEEED WLLAWSDMLN KHKLTENKWL KNLFEVKEKW AMVYGRHTFT ADMVSTQRSE  480
SMNSILKRYL KRNFDLLTFF KHYERVLDDR RYKELVADFG MMHTSPVLVV CVEMLQHAEE  540
VYTPEVFTLF QKEYTVIGDY VAKKTSKSEM VYEYNVSYRG VAREHLVKYD AADQTIHCSC  600
MKFSFAGILC RHALKVLDKK NVRRIPPTYI LNRWSKEAKA RTVSYYHSET PNEAVKQSIG  660
KRYSHICRTF REIASVAAEH IELTLCADKD AIELLKKLEE KKKELVRANK WMPHSLEDKL  720
VDEEEEEDDE DVPNVRGIKR KNPCGRPKNQ KDGSHGRFKS VLEKKNLGTS RSSSKARAKK  780
KLSFQESTPT PDTQLSFATS GPILHNEPFF SQVPEESTPT PDTQLSFAAT GPILHNESFL  840
SQVPQEPTLT PDTHVSAAAT NPTLHSGSFF SQLLQNFDKN YGNGSSKDFN KNYGDGL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111118QRRTKKKK
2112118RRTKKKK
3112119RRTKKKKD
4113119RTKKKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834920.0AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116657.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A397Y1R80.0A0A397Y1R8_BRACM; Uncharacterized protein
STRINGBo5g050670.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-132FAR1-related sequence 5