PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116552.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 270aa    MW: 30035 Da    PI: 4.7388
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-2968126259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY  +Hnh+
  XP_009116552.1  68 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 126
                     69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-3059128IPR003657WRKY domain
PROSITE profilePS5081131.50262128IPR003657WRKY domain
SuperFamilySSF1182902.35E-2563128IPR003657WRKY domain
SMARTSM007746.4E-3467127IPR003657WRKY domain
PfamPF031061.1E-2469126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MHRRGIQESD EEDETYNDVV PDSPSSCEDS KISKPTPKKR RNMEKRVVSV PIADVEGSKS  60
RGEVYPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRV DPSKLMITYA  120
CDHNHPFPSA ANNKSHHHRT TAVVLKTAKK EENMEEEEEE EEEATMVAEE PAGLDLSHVD  180
SSLLLGGCYS ELPEFGWFYD ASISSSSGSS YGGSFLDVTL ERGFSVGEEE DESLFGDLGD  240
LPDCASVFRR GTVATEEQHF GAIPFCDSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-2045129680Disease resistance protein RRS1
5w3x_D2e-2045129680Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116552.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9124130.0EU912413.1 Brassica napus WRKY69-1 transcription factor (WRKY69-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116552.10.0PREDICTED: probable WRKY transcription factor 69 isoform X2
RefseqXP_013688460.10.0probable WRKY transcription factor 69 isoform X2
SwissprotQ93WV51e-154WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBLM4CT710.0M4CT71_BRARP; Uncharacterized protein
STRINGBra007413.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.21e-139WRKY DNA-binding protein 69
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]