PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009116480.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 358aa MW: 38914.6 Da PI: 6.3768

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009116480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6.3e-09	190	237	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq XP_009116480.1 190 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 237 8***********************9....889**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-15	184	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.01E-9	184	241	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.4E-15	186	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.684	186	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	190	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	192	242	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDLTGAFGAR SAAVGACREP PGLESLHLGG GDGGFTALLE LPPTQAVELL HFTDPSPSSS 60 QAAVAGIGLD VSPPPPPLHA YGALTFPSNA ALMERAARFS VMANEQQNGN VSGETTTTSS 120 VPSNSDRVKT EPGETDSSQR LENNRCGIGK RKELDKKVKG STKKKSKSSE ENEKLPYVHV 180 RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCDKIQ GTALVLDEII NHVQSLQRQV 240 EMLSMRLAAV NPRIDFNLDT LLASENCSLI DGSFNGTAMQ LAWPHQVTET EQSFHHRQLQ 300 LQQPPQPQQW PYDGLNQPAW GREDDQGHGN EHNSLMAVSE NLMVGSASLH PNQVKMEL

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDLTGAFGAR SAAVGACREP PGLESLHLGG GDGGFTALLE LPPTQAVELL HFTDPSPSSS  60
QAAVAGIGLD VSPPPPPLHA YGALTFPSNA ALMERAARFS VMANEQQNGN VSGETTTTSS  120
VPSNSDRVKT EPGETDSSQR LENNRCGIGK RKELDKKVKG STKKKSKSSE ENEKLPYVHV  180
RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCDKIQ GTALVLDEII NHVQSLQRQV  240
EMLSMRLAAV NPRIDFNLDT LLASENCSLI DGSFNGTAMQ LAWPHQVTET EQSFHHRQLQ  300
LQQPPQPQQW PYDGLNQPAW GREDDQGHGN EHNSLMAVSE NLMVGSASLH PNQVKMEL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.12732	0.0	bud\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009116480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352728	0.0	AK352728.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-02-C12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009116480.1	0.0	PREDICTED: transcription factor bHLH60
Swissprot	Q3EAI1	1e-176	BH060_ARATH; Transcription factor bHLH60
TrEMBL	M4CT16	0.0	M4CT16_BRARP; Uncharacterized protein
STRING	Bra007358.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-177	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]