PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009116439.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 22830 Da PI: 8.8792 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.7e-19 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp gk++r++lg+f+tae Aa+a+++a++ ++g XP_009116439.1 19 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAEAAARAYDKAARDFRG 68 59*******.**********8...557**********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.4E-37 | 19 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-32 | 19 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-13 | 19 | 68 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.04E-21 | 19 | 77 | No hit | No description |
PROSITE profile | PS51032 | 24.131 | 19 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 19 | 76 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.0E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MVKLGLKPDP VHNNAIEIRY RGVRKRPWGR YAAEIRDPGK KTRVWLGTFD TAEAAARAYD 60 KAARDFRGAK AKTNFPNFLE LSENVSIGGG GGFERSPSKT STLYCASPPA AADIVPPPLE 120 LSLGGRGGAC YQIPVARPMY YLDLMGIGNE GRAVQPPMSL ACRSPAMHVA TKVACGGQSD 180 SDSSSVVDFD GGIEKRAQLL DLDLNLPPPL EQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 19 | 85 | 14 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009116439.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and by Alternaria brassicicola (locally and systemically), but only slightly by ethylene. Strong induction by wounding, cold or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008106 | 1e-59 | AB008106.1 Arabidopsis thaliana AtERF-4 mRNA for ethylene responsive element binding factor 4, complete cds. | |||
GenBank | AF003098 | 1e-59 | AF003098.1 Arabidopsis thaliana AP2 domain containing protein RAP2.5 mRNA, complete cds. | |||
GenBank | AP000413 | 1e-59 | AP000413.1 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K7L4. | |||
GenBank | AY086232 | 1e-59 | AY086232.1 Arabidopsis thaliana clone 22775 mRNA, complete sequence. | |||
GenBank | AY140030 | 1e-59 | AY140030.1 Arabidopsis thaliana ethylene responsive element binding factor 4 (AtERF4) (At3g15210) mRNA, complete cds. | |||
GenBank | BT010325 | 1e-59 | BT010325.1 Arabidopsis thaliana At3g15210 mRNA, complete cds. | |||
GenBank | CP002686 | 1e-59 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116439.1 | 1e-156 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | O80340 | 1e-89 | ERF78_ARATH; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | M4DYJ8 | 1e-155 | M4DYJ8_BRARP; Uncharacterized protein | ||||
STRING | Bra021594.1-P | 1e-155 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 1e-71 | ethylene responsive element binding factor 4 |