PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116292.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 545aa    MW: 60097.6 Da    PI: 7.2561
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08230250526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ G C+ Gd+C +aHg
  XP_009116292.1 230 PCPEFRK-GSCPKGDSCEYAHG 250
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.97E-136149IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.345154IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0224575IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.208.9E-1546154IPR020683Ankyrin repeat-containing domain
PfamPF136372.3E-54798No hitNo description
CDDcd002048.12E-1347152No hitNo description
SMARTSM002480.3780112IPR002110Ankyrin repeat
SMARTSM002481500116151IPR002110Ankyrin repeat
SMARTSM003566.3E-5225251IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976225252IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5230250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-6230251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4257289IPR000571Zinc finger, CCCH-type
SMARTSM0035643260283IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.812260284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGLLEYAACD DLPSFQREIE EKGLDLDEPG LWYCKKLGSN KMGLEQRTPL MVAAMYGSKK  60
VLTFIVSTGK SDVNRACGEE RVTALHCAVA GCSVNMVEVI NALLDASASA NAVDANGNQP  120
LDLFVKVSRF VASPRKKAVE LLLRGGGMIN EPVEEEEEEE VKIVSKYPAD ASLPDINEGV  180
YGSDEFRMYS FKVKPCSRAY SHDWTECAFV HPGENARRRD PRKYPYTCVP CPEFRKGSCP  240
KGDSCEYAHG VFESWLHPAQ YKTRLCKDET GCARKVCFFA HKREEMRPVN ASTGSAVSQS  300
PLEMMPGLYS SGVATRPVSP MSSSVGSSPR NGGSWQNRVN SLSPPALHLN GGSRLKSTLS  360
ARDMDMEMEL EMRLRGFNNV EETFGSYVSS PSRNSQMSHQ HYPSSPVRQQ QPPPSHHFDS  420
SAAVAAAVMN ARSSAFAKRS LSFKPQVASS PSNLSDWGSP SGKLDWGVQG DELSKMRRSV  480
SFGIHGDNNG NNAGRDYRNE PDVSWVNSLV KDSVVSERGG FGMNERVRIM SWAEQMYREK  540
EQTVV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.54410.0bud| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and anthers. {ECO:0000269|PubMed:17609218}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116292.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116292.10.0PREDICTED: zinc finger CCCH domain-containing protein 47
SwissprotQ93ZS90.0C3H47_ARATH; Zinc finger CCCH domain-containing protein 47
TrEMBLM4CSL30.0M4CSL3_BRARP; Uncharacterized protein
STRINGBra007205.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55980.10.0salt-inducible zinc finger 1
Publications ? help Back to Top
  1. LeBlanc M,Kim G,Patel B,Stromberg V,Westwood J
    Quantification of tomato and Arabidopsis mobile RNAs trafficking into the parasitic plant Cuscuta pentagona.
    New Phytol., 2013. 200(4): p. 1225-33
    [PMID:23914903]
  2. Liang Y,Gao Y,Jones AM
    Extra Large G-Protein Interactome Reveals Multiple Stress Response Function and Partner-Dependent XLG Subcellular Localization.
    Front Plant Sci, 2017. 8: p. 1015
    [PMID:28659958]