PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116273.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 371aa    MW: 41047.2 Da    PI: 5.4647
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-184287147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W+teEd  l ++v +lG+++W++Iar ++ gR++k+c++rw + 
   XP_009116273.1 42 KGPWSTEEDAVLTKLVSKLGPRNWSLIARGIP-GRSGKSCRLRWCNQ 87
                     79******************************.***********985 PP
2Myb_DNA-binding538.2e-1794138147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r++++ eEd  ++ a++ +G++ W+ Ia+ ++ gRt++ +k++w++ 
   XP_009116273.1  94 RKPFSDEEDHMIISAHAIHGNK-WAVIAKLLP-GRTDNAIKNHWNST 138
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.1493788IPR017930Myb domain
SuperFamilySSF466891.13E-3039135IPR009057Homeodomain-like
SMARTSM007174.6E-154190IPR001005SANT/Myb domain
PfamPF002496.8E-174287IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-254395IPR009057Homeodomain-like
CDDcd001673.75E-144486No hitNo description
PROSITE profilePS5129424.82989143IPR017930Myb domain
SMARTSM007172.7E-1593141IPR001005SANT/Myb domain
PfamPF002493.8E-1594138IPR001005SANT/Myb domain
CDDcd001671.52E-1196139No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2396142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDRSEPLPFP SSADSDDVTT AAAELAAGDS SGGGYEVKSK VKGPWSTEED AVLTKLVSKL  60
GPRNWSLIAR GIPGRSGKSC RLRWCNQLDP CLKRKPFSDE EDHMIISAHA IHGNKWAVIA  120
KLLPGRTDNA IKNHWNSTLR RKYADLWKNS SQVTTAYIKN ENVEQQLPQE EIVSPPEVPQ  180
VVDVTMYDEP TQVLDDVTMD DASPNEPQEQ APIESSIPVF RPVARAGAFR VYNPTSQRNG  240
YRDHNVVPCE GPLIQAAKPD SLAGKFLQSL CGEPNIPSKC GHGCSTHPAE YGKSVLGAEF  300
VDYEEPCPVF NQELISIATD LNNIAWIKSG LDNAIVREAE QNLKMDQITF SDPRIRFSGM  360
MPRQHFFCAR S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-39411423104C-Myb DNA-Binding Domain
1msf_C1e-39411423104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for male gametophyte (pollen) development. {ECO:0000269|PubMed:22101548}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116273.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: May be the target of the microRNA (miRNA) MIR393a. {ECO:0000269|PubMed:15258262}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747540.0KF974754.1 Brassica napus MYB transcription factor 109-1 (MYB109-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116273.10.0PREDICTED: uncharacterized protein LOC103841480
SwissprotO041921e-116MYB25_ARATH; Transcription factor MYB25
TrEMBLM4CSJ40.0M4CSJ4_BRARP; Uncharacterized protein
STRINGBra007186.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56382747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.10.0myb domain protein 109
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]