PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116230.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 343aa    MW: 37583.5 Da    PI: 9.3382
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116230.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.31.7e-3869127361
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                     e+alkcprC+stntkfCy+nny+l+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk++
  XP_009116230.1  69 EAALKCPRCESTNTKFCYFNNYNLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRN 127
                     6789****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3752126IPR003851Zinc finger, Dof-type
PfamPF027013.9E-3271126IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.33972126IPR003851Zinc finger, Dof-type
PROSITE patternPS01361074110IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVFSSLPVNQ FDSHNWQQQG NTQQLDRVTS DQNPLQHFSS PPAAQAGSSQ ARVNSMVERA  60
RIAKIPLPEA ALKCPRCEST NTKFCYFNNY NLTQPRHFCK TCRRYWTRGG ALRNVPVGGG  120
FRRNKRNKPN GGGRSKATVA VSADNNNTTS LLSCHPSYSN PSKFLSYGQM PGFNSNLPIL  180
PPFQSLGDYI SSNIGLDWSS SGGIVDPWRI PSLQQAQQFP FLINAKGLEQ PSTVMYPSLE  240
GNEGVSYANP QKEGSDYSSQ LRSKPLMDMA SSGDQTAQAR NVKAEENDQG GNGLNNFSRN  300
FLGNINIKPV EENDGYTSWG GSSNISSSWT GFSSNNSTGH LSF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121128RRNKRNKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:10758484}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116230.10.0PREDICTED: dof zinc finger protein DOF3.6
SwissprotQ9M2U11e-149DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A397Y1Q90.0A0A397Y1Q9_BRACM; Uncharacterized protein
STRINGBra007156.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17132886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.21e-144OBF-binding protein 3