PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116196.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 343aa    MW: 38181.8 Da    PI: 9.8792
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-18117166155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  XP_009116196.1 117 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYAAARAYDRAAIKFRG 166
                     78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9117166IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-15117174IPR016177DNA-binding domain
SMARTSM003806.1E-30118180IPR001471AP2/ERF domain
PROSITE profilePS5103217.332118174IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-16118174IPR001471AP2/ERF domain
CDDcd000182.24E-11118173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009658Biological Processchloroplast organization
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MLDLSLGMFS NYGEDQDRKV PFVSTAGDEE SNISSSSSKD SAAGKDFITF GILKRDDDVV  60
PPPPPSRETG DLFPVADARR NIEFSLDDGH WLRLSSLQRN KQQVVKKSRR GPRSRSSQYR  120
GVTFYRRTGR WESHIWDCGK QVYLGGFDTA YAAARAYDRA AIKFRGLDAD INFVVEDYRQ  180
DLDKMKNLNK VEFVQTLRRE SASFGRGSSK YKGLTLQKCT QLKTHHDQIH LFQNRGWDAA  240
AIKYNNELGK GGVMKSGASI KGNIHNDLEL SLGISSSSQN IKLTTSDYYK GNQSAMGLFG  300
KHSPIYLPVT TMNPLKTVAA SSGFPFITMT TSSSSSMSTS FDP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00075ChIP-chipTransfer from AT3G54990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116196.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116196.10.0PREDICTED: AP2-like ethylene-responsive transcription factor SMZ
SwissprotQ6PV681e-153SMZ_ARATH; AP2-like ethylene-responsive transcription factor SMZ
TrEMBLA0A078JMS10.0A0A078JMS1_BRANA; BnaA09g54740D protein
TrEMBLA0A397Y5Y20.0A0A397Y5Y2_BRACM; Uncharacterized protein
TrEMBLM4CSD10.0M4CSD1_BRARP; Uncharacterized protein
STRINGBra007123.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54990.11e-147AP2 family protein
Publications ? help Back to Top
  1. Gras DE, et al.
    SMZ/SNZ and gibberellin signaling are required for nitrate-elicited delay of flowering time in Arabidopsis thaliana.
    J. Exp. Bot., 2018. 69(3): p. 619-631
    [PMID:29309650]