PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009116029.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family S1Fa-like
Protein Properties Length: 76aa    MW: 8290.01 Da    PI: 10.7312
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009116029.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA129.31.1e-40976370
            S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    +a++eakG+nPGlivllv+g +l+ +lv+ny++yvyaqknlPPrkkkPvskkklkreklkqGv+vPGe
  XP_009116029.1  9 KAAAEAKGMNPGLIVLLVIGVPLVGLLVANYVMYVYAQKNLPPRKKKPVSKKKLKREKLKQGVSVPGE 76
                    7899***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.4E-351276IPR006779DNA binding protein S1FA
ProDomPD0190130.0081376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 76 aa     Download sequence    Send to blast
MDGEDFARKA AAEAKGMNPG LIVLLVIGVP LVGLLVANYV MYVYAQKNLP PRKKKPVSKK  60
KLKREKLKQG VSVPGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.140011e-127flower
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009116029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892691e-111AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009116029.11e-46PREDICTED: DNA-binding protein S1FA1-like
SwissprotQ423379e-18S1FA2_ARATH; DNA-binding protein S1FA2
TrEMBLM4CS023e-45M4CS02_BRARP; Uncharacterized protein
STRINGBra006994.1-P6e-46(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28232769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.13e-08S1FA-like DNA-binding protein