PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009116025.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 265aa MW: 29896.4 Da PI: 4.5501 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.9 | 9e-19 | 13 | 102 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffkv+ + ++s + +p +f e+ + + +++ +l+ + g +W+v++ + ++ ++t+GW++F+++++Lk+g+f++F +dg+++f v+ XP_009116025.1 13 FFKVF--LSETASESMAIPMSFNEHLEDP--LPQKAKLQGTGGGVWTVTF--TTIRDCAYFTSGWSKFAEDHELKDGEFLTFVYDGHHTF--EVS 99 88999..666777779******9655655..8889***************..666666889************************98888..777 PP EE- CS B3 96 vfr 98 vf XP_009116025.1 100 VFG 102 775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-23 | 10 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-21 | 11 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.253 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.74E-18 | 11 | 101 | No hit | No description |
Pfam | PF02362 | 1.2E-15 | 13 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-21 | 13 | 104 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-7 | 169 | 259 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-9 | 170 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.1 | 174 | 262 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MAENEDDVVL PRFFKVFLSE TASESMAIPM SFNEHLEDPL PQKAKLQGTG GGVWTVTFTT 60 IRDCAYFTSG WSKFAEDHEL KDGEFLTFVY DGHHTFEVSV FGHGRCKETR AVVETVDLSD 120 SGEEEEEEDS SVEDDGEVEK VSQSIYPVDS NQTVSDDAVV AWLSSMEVTG NPCFTTNLKQ 180 RTYELLIPAN VVREHALTFG DNIKYIDAEG VMKGVRGKWA EDRVCFKGWD SICRRNRLKE 240 RDTVNCEMLH IRKKVHSVKI TVTCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 8e-20 | 12 | 106 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009116025.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189269 | 0.0 | AC189269.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009116025.1 | 0.0 | PREDICTED: B3 domain-containing protein REM20 | ||||
Refseq | XP_013675315.1 | 0.0 | B3 domain-containing protein REM20 | ||||
Swissprot | Q8LAV5 | 7e-94 | REM20_ARATH; B3 domain-containing protein REM20 | ||||
TrEMBL | M4CRZ7 | 0.0 | M4CRZ7_BRARP; Uncharacterized protein | ||||
STRING | Bra006989.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 2e-83 | B3 family protein |
Publications ? help Back to Top | |||
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