PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115944.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 242aa    MW: 26843.6 Da    PI: 6.5
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115944.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.13.4e-372379662
          zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     +cprC s+ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rk+++ +
  XP_009115944.1 23 PSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRPK 79
                    58***************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-251977IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.632377IPR003851Zinc finger, Dof-type
PfamPF027011.4E-312477IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102561IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MERTEALTSS FIWRPNANAE ITPSCPRCGS SNTKFCYYNN YSLTQPRYFC KGCRRYWTKG  60
GSLRNVPVGG GCRKSRRPKS SSGNTKTGLT ANSYNSGGGS PNIDLALVYA NFLNPKPDEH  120
KRQENCDTDF LVDEPAGASM EPLWRDIGHG HHHHHYEHQV EHIVQECGYN ELPPFPGEEL  180
LSIDTSGVWS EALLNGHNHV DVGGVTPAQI VQDPVVHFAD KSNDSTNLLF GSWSPFEFSV  240
DG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115944.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115944.10.0PREDICTED: dof zinc finger protein DOF3.5-like
SwissprotQ9SVC51e-143DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLM4CRT10.0M4CRT1_BRARP; Uncharacterized protein
STRINGBra006923.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-136Dof family protein