PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009115943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 13676.4 Da PI: 6.2373 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.3 | 4.9e-17 | 54 | 122 | 4 | 73 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 +++++++lk + l+lpk+ +++ ++k++ ++++l +++g+sW+ +l+++ ++g+y++t+GW +F+++n+ XP_009115943.1 54 AEVTASNLKADKLYLPKRATSSTALNKQC-QEMILVNKEGNSWTANLRFSESGGMYYITRGWGKFCRDNK 122 67899999***************999877.5*************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.71E-15 | 50 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.25E-16 | 51 | 122 | No hit | No description |
PROSITE profile | PS50863 | 12.294 | 51 | 122 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-14 | 51 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.7E-16 | 54 | 122 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MVFHVTPFGP SCCEIQYTHP HIIKEEADAG DADDNEIRGT GAMSSFSFDY CFLAEVTASN 60 LKADKLYLPK RATSSTALNK QCQEMILVNK EGNSWTANLR FSESGGMYYI TRGWGKFCRD 120 NK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009115943.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189464 | 7e-85 | AC189464.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB075L03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115943.2 | 2e-87 | PREDICTED: B3 domain-containing protein REM7-like | ||||
TrEMBL | M4DXM4 | 3e-87 | M4DXM4_BRARP; Uncharacterized protein | ||||
STRING | Bra021270.1-P | 6e-88 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24700.1 | 3e-22 | B3 family protein |