PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115873.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 301aa    MW: 34581.5 Da    PI: 6.6081
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.81.5e-2587145155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk....vkgLtlehvkSHLQkYRl 55 
                     kpr+ WtpeLH+ F +ave++GG e+A+Pk+il++m+     +gLt+++v+SHLQkYRl
  XP_009115873.1  87 KPRMTWTPELHQLFEKAVEKMGGVEQAVPKQILKCMQeekdAEGLTRNNVASHLQKYRL 145
                     79**********************************7333368***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.51984148IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-2484146IPR009057Homeodomain-like
SuperFamilySSF466891.42E-1486146IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-2187146IPR006447Myb domain, plants
PfamPF002491.7E-989144IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSHEHKKKTV MESTKRGSCN FLLKPVSKEI IAVLWQHVYR KRVSIYSVES NPEENVGLDQ  60
DDIDLYQTNS NSGEQTSSYQ KEGKNKKPRM TWTPELHQLF EKAVEKMGGV EQAVPKQILK  120
CMQEEKDAEG LTRNNVASHL QKYRLNSGKK SSMIQETRED SEWRNAGPNT ALTASKPLPN  180
SIFGLHTRVP YFANDQDARN GPMQYPSTNY FTMDNGHFMT NSFANLPYTD SFHQQQQQQF  240
QHQQYSNSSL QLPSVITKQE FPYVSAALEN PDLIANENSL YMDLGDYLQE GLSDFDKTNR  300
Y
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in mature pistil tip. Also detected in the shoot apical meristem as well as vascular tissue and hydathodes of the leaves. {ECO:0000269|PubMed:15173562}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553350.0AC155335.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' chromosome Cytogenetic chromosome 1 clone KBrH001H24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115871.10.0PREDICTED: putative two-component response regulator ARR20 isoform X1
SwissprotQ9LZJ83e-69ARR20_ARATH; Putative two-component response regulator ARR20
TrEMBLM4FIU80.0M4FIU8_BRARP; Uncharacterized protein
STRINGBra041027.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62670.19e-72response regulator 20