PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009115789.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1283aa MW: 141640 Da PI: 7.3355 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.7e-06 | 1262 | 1283 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ f+++G+Ck G+ C+F H+ XP_009115789.1 1262 KICK-FYESGYCKKGAACSFWHP 1283 6899.8999***********997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 5.4E-7 | 82 | 143 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 2.1E-7 | 84 | 142 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 8.582 | 88 | 154 | IPR019787 | Zinc finger, PHD-finger |
CDD | cd15568 | 1.07E-18 | 90 | 135 | No hit | No description |
SMART | SM00249 | 1.6E-6 | 90 | 136 | IPR001965 | Zinc finger, PHD-type |
PROSITE pattern | PS01359 | 0 | 91 | 151 | IPR019786 | Zinc finger, PHD-type, conserved site |
SMART | SM00151 | 3.1E-4 | 294 | 384 | IPR019835 | SWIB domain |
SuperFamily | SSF47592 | 3.92E-22 | 303 | 380 | IPR003121 | SWIB/MDM2 domain |
Gene3D | G3DSA:1.10.245.10 | 2.0E-24 | 304 | 384 | IPR003121 | SWIB/MDM2 domain |
Pfam | PF02201 | 4.5E-15 | 308 | 379 | IPR003121 | SWIB/MDM2 domain |
PROSITE profile | PS51360 | 19.397 | 438 | 571 | IPR004343 | Plus-3 domain |
SMART | SM00719 | 4.0E-48 | 438 | 548 | IPR004343 | Plus-3 domain |
SuperFamily | SSF159042 | 7.32E-27 | 439 | 566 | IPR004343 | Plus-3 domain |
Pfam | PF03126 | 1.1E-18 | 443 | 546 | IPR004343 | Plus-3 domain |
SuperFamily | SSF55277 | 1.26E-15 | 707 | 763 | IPR003169 | GYF domain |
CDD | cd00072 | 2.03E-18 | 710 | 767 | No hit | No description |
PROSITE profile | PS50829 | 15.192 | 710 | 764 | IPR003169 | GYF domain |
SMART | SM00444 | 1.7E-14 | 711 | 766 | IPR003169 | GYF domain |
Pfam | PF02213 | 5.6E-11 | 712 | 756 | IPR003169 | GYF domain |
Gene3D | G3DSA:3.30.1490.40 | 3.8E-16 | 712 | 764 | IPR003169 | GYF domain |
SuperFamily | SSF90229 | 1.49E-5 | 1258 | 1282 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.817 | 1258 | 1283 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-4 | 1262 | 1282 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1283 aa Download sequence Send to blast |
MENQQKHQLQ QVRGDESSVK GVVDRVRVDQ CGEIGASQAP SVPAPTVAGV VDEAAPVKRK 60 RGRPPRAHGK TVSQTRPPPP PRKDEKEEDV CFICFDGGDL VLCDRRNCPK AYHPACIKRD 120 EAFFRTAAKW NCGWHICGTC QKGSSYMCYT CTFSVCKRCI KDADYVIVRG NMGLCGTCIK 180 PIMLIENISQ GDNEAVKVDF DDKLSWEYLF KVYWLCLKEE LSLTVEELTR ANNPWKEVPY 240 TVPKVESRNI HTLSKACSSG NSDSDVVANG TKRKRTSDSP TVPSKLDSKI PSNIPKKLPG 300 DTNWATKELL EFLSVMRNGD TSVLSQFDVQ GLLLDYIKKK NLRDPNQKSQ VVCDQMLVKL 360 FGRQRVGHFE MLKLLESHFL IQEKPKEEKP KNGESSHAVR SQIEEDSAYD PVVRDRKRKM 420 RRKTDGGVQN ENLDAYAAID VHNINLIYLR RKFLETLLDD INKVHEKVVG TILRIKVSGS 480 DQKLDIYRLV QVVGTSKASA SYQLGTKTTD VMLEILNLDK REVISIDQLS DQNVTEDECK 540 RLRQSIKCGL NKRLTVGDIL KTAATLQVMR VNEVLEADML KLGHLRDRAS EQGRKKELRE 600 CVEKLGRLES PEERQRLLQE VPEVHTDPSM DPSHPSAEDA VLDKHIEVQS KSPKKKRDIL 660 NNLGNNPQKK YDAPVLRSRK AMHATNKEEC SKVDNNSADI QQTGKDDEES EIWHYRDPAG 720 KTQGPFSMVQ LRKWKSCGHF PPYLRIWKEH ENQDESVLLT DALAGRFDKA TTLPSSSFHP 780 QELKPSPHHS GRTGVDVNCL QKNLKPVSTS STSSSSSIVN ALPNDPKEKQ VATLVPCSGK 840 VEDGISVRPQ PQVSCPASMS VIPGHVITPD VRENSGTDQS SAVRPDGKTL EDGANSGSVS 900 INGSVHAPNL NQKIHFRDFP SPTPKSSPED LEAQAAETIQ SLSSCVLVKG PSGVTWSTTA 960 TTTVDAPTTT TTTSSVVVTG GQLPQVTQQS AVDLAAPSVK HIDLAADHAT ATHTSNNTHV 1020 AHSSGWPAIV ADPDECDESV SDLLAEVEAM EQNGLPSSPT STFHCDDDDD LMKGPEKDFF 1080 NPVLRMFLTH ETCRMDVSQP SFLDYVSAGK SSTGTEAQDN THFSHCGTAG PELLLAPPAP 1140 ASTSQDLTLT TTALRLGSET TVEAGLVERP PKYASGVGLE SSLRSPSSHD PARGNTERSP 1200 RGNGSQQRRS GGHSRDRQWW NNGHNNSLNN SHNNNRQWPY SSSHGYDHGS GSYTAHPPKG 1260 LKICKFYESG YCKKGAACSF WHP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4gnd_A | 1e-12 | 88 | 157 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnd_C | 1e-12 | 88 | 157 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gne_A | 1e-12 | 88 | 157 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gnf_A | 1e-12 | 88 | 157 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_A | 1e-12 | 88 | 157 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
4gng_D | 1e-12 | 88 | 157 | 15 | 81 | Histone-lysine N-methyltransferase NSD3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Bra.6456 | 0.0 | root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009115789.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189508 | 0.0 | AC189508.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB088I08, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115789.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 44-like isoform X2 | ||||
Swissprot | Q9SD34 | 0.0 | C3H44_ARATH; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A397XZL4 | 0.0 | A0A397XZL4_BRACM; Uncharacterized protein | ||||
STRING | Bra036836.1-P | 0.0 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G51120.1 | 0.0 | DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding |