PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009115767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ZF-HD | ||||||||
Protein Properties | Length: 219aa MW: 25077 Da PI: 10.1981 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 97.3 | 1.2e-30 | 59 | 115 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++++YkeC+kNhA+s+Ggh+vDGC+Efmp geegt alkCaAC CHR+FHR+ev e XP_009115767.1 59 QETKYKECQKNHAVSTGGHVVDGCCEFMPG-GEEGTLGALKCAACSCHRSFHRKEVYE 115 5789*************************9.999********************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.2E-28 | 61 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-23 | 62 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 7.8E-27 | 62 | 113 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.433 | 63 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 7.39E-18 | 138 | 210 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 147 | 210 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.2E-25 | 149 | 206 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MEHGGKCNAI ATTTKISTKI LEAKPHTNSY PKAKPGLDPT LPPFLVKKEN HKPSSRGDQE 60 TKYKECQKNH AVSTGGHVVD GCCEFMPGGE EGTLGALKCA ACSCHRSFHR KEVYEHINST 120 QELMSPAFYR SGSLYKAMIQ PRGLYLPKKK RIRTKINEEQ KEKMKEFAER LGWRILKKDE 180 EEINKFCRLV NLRRQVFKVW MHNNKQAMKR NGNACNLQK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-18 | 150 | 207 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bra.22472 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009115767.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115766.1 | 1e-165 | PREDICTED: zinc-finger homeodomain protein 7 | ||||
Refseq | XP_013752392.1 | 1e-165 | zinc-finger homeodomain protein 7 | ||||
Swissprot | Q9SVL0 | 1e-100 | ZHD7_ARATH; Zinc-finger homeodomain protein 7 | ||||
TrEMBL | A0A397XZJ4 | 1e-163 | A0A397XZJ4_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F6Z2 | 1e-163 | M4F6Z2_BRARP; Uncharacterized protein | ||||
STRING | Bra036852.1-P | 1e-164 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50890.1 | 4e-95 | homeobox protein 28 |