PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115680.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 245aa    MW: 26699.3 Da    PI: 7.1979
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115680.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.43e-302103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++++pe++ +++++sl+yeA+ r+ +Pv+Gavg+++++++ ++q+
  XP_009115680.1   2 SCNGCRVLRKGCSESCILRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISSVPESQSPALFQSLLYEACGRTVNPVNGAVGLLWTGNWSICQA 96 
                     6*********************9998777889*************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  XP_009115680.1  97 AVETVLR 103
                     *999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.4951107IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSESCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISSVPESQS  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WSICQAAVET VLRGGSLRPM PELLTRDGGF  120
GGFPSTTSDE ASEICTEMLN DCGDRSAYHH CRFSSSRTSR PTASPPNRKR LASEQQQRQS  180
SELDLSLLPT FPIKTTPLKE ETVRPETPSM YSGESVTTTP FMDNIAGERF VRVGGETTKL  240
LNLFA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.218610.0bud| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115680.10.0PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN231e-130LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A291LR241e-180A0A291LR24_BRARR; Transcription factor LBD38
TrEMBLA0A397Y8141e-180A0A397Y814_BRACM; Uncharacterized protein
TrEMBLM4F4P01e-180M4F4P0_BRARP; Uncharacterized protein
STRINGBra036040.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-128LOB domain-containing protein 38