PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009115670.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 263aa MW: 29264 Da PI: 6.9712 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1e-09 | 6 | 56 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 + WT+ E l d+v+++G+g W+ I + k R+ ++k++w+++ XP_009115670.1 6 KMWTPKEVTALRDGVRKYGSGKWSGILSDSKygralKARSNVDLKDKWRNL 56 67***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.81 | 1 | 68 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.04E-13 | 3 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0059 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.8E-13 | 4 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-7 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 9.64E-16 | 6 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 263 aa Download sequence Send to blast |
MGGRKKMWTP KEVTALRDGV RKYGSGKWSG ILSDSKYGRA LKARSNVDLK DKWRNLGAGT 60 FGSRKKKVLA IVAVANDNDG EQEIVPASPV NDDDEGLFAS VDTFILEAIT SWKKLLRPNK 120 KWILHHVEEK NSMQPGKKWL VASRLEHLVN VGTIIKKNNR YTISPTYAAA EAEQSSPQLL 180 LEGVVNHTKS QEDGEAFKIN GMTEEEASSA AAIALEEAEF ARAEAEEAAR EADRAEEEAE 240 AMQDYAKAVK EVWKNLMRSQ TWC |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:15060584}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269|PubMed:19102728}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009115670.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115670.1 | 0.0 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_009115671.1 | 0.0 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_009115672.1 | 0.0 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_009115673.1 | 0.0 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_009115674.1 | 0.0 | PREDICTED: telomere repeat-binding factor 3-like | ||||
Refseq | XP_013691529.1 | 0.0 | telomere repeat-binding factor 3-like isoform X1 | ||||
Swissprot | Q9M2X3 | 7e-51 | TRB3_ARATH; Telomere repeat-binding factor 3 | ||||
TrEMBL | A0A397XZ88 | 0.0 | A0A397XZ88_BRACM; Uncharacterized protein | ||||
STRING | Bo8g079140.1 | 1e-138 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21564 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49850.1 | 3e-52 | telomere repeat binding factor 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|