PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115622.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18866.2 Da    PI: 10.4067
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.4e-151150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i+++  r vtf kR++g+lKK +EL +LC+ +++ ii+s 
  XP_009115622.1 11 ISDNATRRVTFRKRKHGLLKKLNELTILCGLRACAIIYSD 50
                    899999********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.96E-21184IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.815150IPR002100Transcription factor, MADS-box
SMARTSM004324.4E-19160IPR002100Transcription factor, MADS-box
CDDcd002663.80E-22285No hitNo description
PRINTSPR004046.5E-8323IPR002100Transcription factor, MADS-box
PfamPF003199.9E-151150IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MGRRKVTHQL ISDNATRRVT FRKRKHGLLK KLNELTILCG LRACAIIYSD YEEGPEVWPN  60
RKEVRVLLNR FRALPVEKQT KFMMDQKDLM NRMIQDAKKR LEKEQMHSRA MELGLIASSN  120
DIRDADYSED LIKAADVVEK KIKVIRERIK AVESGAAILM IE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVTHQLISDNATRRVTFRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115622.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115622.11e-116PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM4E6W61e-114M4E6W6_BRARP; Uncharacterized protein
STRINGBra024521.1-P1e-115(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.21e-78AGAMOUS-like 87