PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115419.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 416aa    MW: 47322.9 Da    PI: 6.7155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.7e-52161431128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     l pGfrFhPtdeelv++yLk+kv++++l++ e i+++diyk++PwdLp+ + ++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+
  XP_009115419.1  16 LLPGFRFHPTDEELVSFYLKRKVQHHPLSI-ELIRQLDIYKYDPWDLPRFAMTGEKEWYFYCPRDRKYRNSSRPNRVTGAGFWKATGTDRPIYSS 109
                     579***************************.89***************7666789***************************************9 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl
  XP_009115419.1 110 eGNKCIGLKKSLVFYQGRAAKGVKTDWMMHEFRL 143
                     56667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-5912175IPR003441NAC domain
PROSITE profilePS5100557.40616175IPR003441NAC domain
PfamPF023651.5E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGERNVDGDQ KMEEVLLPGF RFHPTDEELV SFYLKRKVQH HPLSIELIRQ LDIYKYDPWD  60
LPRFAMTGEK EWYFYCPRDR KYRNSSRPNR VTGAGFWKAT GTDRPIYSSE GNKCIGLKKS  120
LVFYQGRAAK GVKTDWMMHE FRLPSISEPT PSSKRFFDSP VSPNDSWAIC RIFKKSNTTS  180
LKALSHSFVS SLPSDTSIDT MSNQKPSNTS HFSSDLKTSS HFQFHHENTN KIPKTSSSTT  240
PLAAPISPFS YLDFTSYEPT NDFNPVSCLD QQYLTNLFLA PQEIQAQFPR LASSNEFPSF  300
LLNMPSSYSS FLGECNGKID LSAVLTQEQC PDLVSLPQEY QEKGLEGNGE MRNMHSFNED  360
LHSHCATLRS GDIASTVEEK HPHHYQDVKH NMTLLESYYS SLSSVNGDLP ACFSTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-571617917169NO APICAL MERISTEM PROTEIN
1ut4_B7e-571617917169NO APICAL MERISTEM PROTEIN
1ut7_A7e-571617917169NO APICAL MERISTEM PROTEIN
1ut7_B7e-571617917169NO APICAL MERISTEM PROTEIN
3swm_A8e-571617920172NAC domain-containing protein 19
3swm_B8e-571617920172NAC domain-containing protein 19
3swm_C8e-571617920172NAC domain-containing protein 19
3swm_D8e-571617920172NAC domain-containing protein 19
3swp_A8e-571617920172NAC domain-containing protein 19
3swp_B8e-571617920172NAC domain-containing protein 19
3swp_C8e-571617920172NAC domain-containing protein 19
3swp_D8e-571617920172NAC domain-containing protein 19
4dul_A7e-571617917169NAC domain-containing protein 19
4dul_B7e-571617917169NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115419.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115419.10.0PREDICTED: protein FEZ-like
RefseqXP_013746879.10.0protein FEZ-like
SwissprotQ9ZVH00.0FEZ_ARATH; Protein FEZ
TrEMBLA0A397Y7C80.0A0A397Y7C8_BRACM; Uncharacterized protein
STRINGBra024677.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.10.0NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]