PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009115413.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 327aa MW: 37133.9 Da PI: 7.4319 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117.8 | 4.3e-37 | 76 | 135 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny++sqPr+fC++C+ryWt GG++r vPvG+grrknk + XP_009115413.1 76 PDKILPCPRCNSSDTKFCYYNNYNVSQPRHFCRSCQRYWTSGGTMRIVPVGSGRRKNKGW 135 7899*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 72 | 133 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.3E-31 | 78 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.108 | 80 | 134 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 82 | 118 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MSELIDTPVK LFGWTITSSL SLTNNQSATD NIEQASTSLQ RSSDLTEESK ETSENSEITT 60 TTTTSEEKTT DDLKKPDKIL PCPRCNSSDT KFCYYNNYNV SQPRHFCRSC QRYWTSGGTM 120 RIVPVGSGRR KNKGWVSTHH YMHTENTRSS EKILSFDSSG EESLVTENGK NQSSDSVSRD 180 FNNFQRFLPP QVTSSVSPPW PYPAFYHIPV YWGCTVPFWS TLQTSTCLGK RTRDEASHVS 240 VGENEDTSVR ARLDSQSRSN NDEANVATKN RVFYPVPMKR EKTQQFNLFV NESETKSGNN 300 RFVPETYLNL QANPAAMSRS MNFRESM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009115413.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006535 | 2e-72 | AC006535.7 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I, complete sequence. | |||
GenBank | CP002684 | 2e-72 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009115413.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.3-like | ||||
Refseq | XP_022546725.1 | 0.0 | dof zinc finger protein DOF1.3-like | ||||
Swissprot | Q9LQX4 | 1e-146 | DOF13_ARATH; Dof zinc finger protein DOF1.3 | ||||
TrEMBL | A0A078FUW3 | 0.0 | A0A078FUW3_BRANA; BnaA09g29270D protein | ||||
TrEMBL | M4E7C8 | 0.0 | M4E7C8_BRARP; Uncharacterized protein | ||||
STRING | Bra024683.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14082 | 16 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26790.1 | 1e-135 | Dof family protein |