PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115302.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 277aa    MW: 32214 Da    PI: 5.875
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115302.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-141663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l +++   G g+W+  a+  g++R +k+c++rw++yl
   XP_009115302.1 16 KGPWTLEEDTILTNYISHNGEGRWNVLAKSSGLKRKGKSCRLRWLNYL 63
                     79******************************99************97 PP
2Myb_DNA-binding49.41e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ q+G++ W++Ia++++ gRt++++k++w++
   XP_009115302.1  69 RGNLTPQEQLLILELHCQWGNR-WSKIAQYLP-GRTDNEIKNYWRT 112
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.3521163IPR017930Myb domain
SuperFamilySSF466891.16E-2814110IPR009057Homeodomain-like
SMARTSM007177.1E-121565IPR001005SANT/Myb domain
PfamPF002491.6E-121663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-211770IPR009057Homeodomain-like
CDDcd001675.96E-81863No hitNo description
PROSITE profilePS5129423.77264118IPR017930Myb domain
SMARTSM007174.9E-1368116IPR001005SANT/Myb domain
PfamPF002492.5E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2271117IPR009057Homeodomain-like
CDDcd001671.18E-973112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKKRCNENEE GIEQRKGPWT LEEDTILTNY ISHNGEGRWN VLAKSSGLKR KGKSCRLRWL  60
NYLKPDIKRG NLTPQEQLLI LELHCQWGNR WSKIAQYLPG RTDNEIKNYW RTRVQKQARQ  120
LNIDSSSHQF LEAVRSFWVP RLIHKMKDNS NTNTKTPHPD SLGPVSHDSG FNMGCSTSMS  180
QELTEMSQFI DLSDLETTNL MSLKGSRGSS NQCVSEEYYS SLPCLEEEYM VPTMGNSDIL  240
PFKDCHVADS SYEEDVTQDP MWNMDDIWQF EEYAHFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-24161184105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-24161184105C-Myb DNA-Binding Domain
1msf_C6e-24161184105C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753LKRKGKS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00159DAPTransfer from AT1G25340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115302.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM9756630.0KM975663.1 Brassica napus MYB transcription factor 116.1 (MYB116.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115302.10.0PREDICTED: transcription factor MYB57
SwissprotQ9C9G71e-102MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A078HUE30.0A0A078HUE3_BRANA; BnaA09g28450D protein
STRINGBra024760.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25340.11e-163myb domain protein 116
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]