PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009115180.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 318aa    MW: 35327.5 Da    PI: 8.1305
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009115180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.41.7e-36461622135
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                      g+kdrhsk+ T++g+RdRR+Rls+ +a++f+dLqd+LGfd++sk++eWL+++a  +i el+  ++s  +                  a + +++
  XP_009115180.1  46 SGGKDRHSKVLTSKGLRDRRIRLSVATAIQFYDLQDRLGFDQPSKAVEWLINAAADSISELPPINTSFDQ------------------ALSLSKS 122
                     689************************************************************9555552..................2222233 PP

             TCP  97 skksqksaasalnlak.esrakarararertrekmriknk 135
                       +s +s++s l+l++ esr kar+rarert++++ ++ +
  XP_009115180.1 123 ACSSGTSESSLLSLSRtESRGKARERARERTAKDKDKDLQ 162
                     44555666777999999**************999887755 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.0E-3347129IPR005333Transcription factor, TCP
PROSITE profilePS5136931.80248106IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.833139157IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEVDDDIDEQ QQTSRKLQRI SSDNDKNGMR DWNNPSSRII RVSRASGGKD RHSKVLTSKG  60
LRDRRIRLSV ATAIQFYDLQ DRLGFDQPSK AVEWLINAAA DSISELPPIN TSFDQALSLS  120
KSACSSGTSE SSLLSLSRTE SRGKARERAR ERTAKDKDKD LQNAQSSFTQ LLTGGFDEPN  180
RNWIGGSSSD CFNPVQLIPN SSSSSLHHYN NNNHRQETSL NHHLSFVPDY NFGISSSDSP  240
AAAPVNGGCY TSRGTLQSNS HSHFLNNNNV NQRPISFMAT PPPLDHHNHQ LPATFDGRLY  300
LYYGEGNRSS DDKGKDGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2153107155Putative transcription factor PCF6
5zkt_B2e-2153107155Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). In association with ABAP1, exerts a negative role in cell proliferation in leaves, possibly by inhibiting mitotic DNA replication. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18818695, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009115180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009115180.10.0PREDICTED: transcription factor TCP24-like
RefseqXP_009115181.10.0PREDICTED: transcription factor TCP24-like
SwissprotQ9C7581e-147TCP24_ARATH; Transcription factor TCP24
TrEMBLM4EU830.0M4EU83_BRARP; Uncharacterized protein
STRINGBra032365.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138401726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.21e-118TCP family protein
Publications ? help Back to Top
  1. Wang H,Mao Y,Yang J,He Y
    TCP24 modulates secondary cell wall thickening and anther endothecium development.
    Front Plant Sci, 2015. 6: p. 436
    [PMID:26157444]
  2. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]