PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114997.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 260aa MW: 29100 Da PI: 9.7205

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114997.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	54.8	2.4e-17	19	109	2	73
trihelix 2 WtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 Wt +e+++Liea++ ++er r++ ++ +W+++ ++++++g+ rs++qC++kw+nl ++ykk++e e++r + XP_009114997.1 19 WTLNETMVLIEAKKMDDERRMRRSiglpaaeqshdsrsssgnkPAELRWKWIEDYCWRKGCMRSQNQCNDKWDNLMRDYKKVREYERRRVE 109 ************666666665445555666666667777669999**************************************9843 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.713	11	94	IPR017877	Myb-like domain
Pfam	PF13837	3.2E-13	18	109	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MAGKSGGLAM MREYRKGNWT LNETMVLIEA KKMDDERRMR RSIGLPAAEQ SHDSRSSSGN 60 KPAELRWKWI EDYCWRKGCM RSQNQCNDKW DNLMRDYKKV REYERRRVES SFAAESSSSA 120 AAETGTYWTM EKSERKERNL PSNMSPQTYQ ALFDVVESKT HPSSTAATNV TAAVAAAAAS 180 GNGSGGGLQI QKMIQQQQEQ GLGFVQKHQM IQPHVLLPLH PPPPPPLPPS QALQPRPLLL 240 SPPPPPSFHA QPILPTVEGY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114997.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189444	0.0	AC189444.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB070J23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114995.1	0.0	PREDICTED: uncharacterized protein LOC103840254 isoform X3
TrEMBL	M4E324	0.0	M4E324_BRARP; Uncharacterized protein
STRING	Bra023175.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	7e-68	Trihelix family protein