PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009114934.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | CPP | ||||||||
Protein Properties | Length: 258aa MW: 29411.6 Da PI: 8.1466 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 50.1 | 5.6e-16 | 23 | 58 | 4 | 39 |
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 +gC+Ck++kClkkYCeCf+a++ Cs++CkC +C+N XP_009114934.1 23 RGCKCKRTKCLKKYCECFQANALCSDNCKCINCENV 58 79*********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 16.321 | 1 | 60 | IPR005172 | CRC domain |
SMART | SM01114 | 1.2E-15 | 20 | 61 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.7E-12 | 23 | 57 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MICALYYIYS KAAADTKHGL LSRGCKCKRT KCLKKYCECF QANALCSDNC KCINCENVSA 60 LGATNNTPDS LICAPQSSLQ VYRRRRRYRE LLPEWNSCPA PLSSMPDNYV LDSLESPMYS 120 STKLPYKKKR SRLGCTTPKL VPDLGDLRSL LLAASESATA NAGLQDKNRI RIKPDDKELW 180 NESESGIVEE EDIQSCGRLI QLIDAQYNDE VDPQTKTSFP ERDAYMEQER AVLETFRDCL 240 HKYMKKIGFM KGTNYYHF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009114934.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114934.2 | 0.0 | PREDICTED: protein tesmin/TSO1-like CXC 8 | ||||
Swissprot | Q700D0 | 1e-89 | TCX8_ARATH; Protein tesmin/TSO1-like CXC 8 | ||||
TrEMBL | M4DXB9 | 1e-167 | M4DXB9_BRARP; Uncharacterized protein | ||||
STRING | Bra021165.1-P | 1e-168 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14844 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16160.1 | 2e-77 | Tesmin/TSO1-like CXC domain-containing protein |