PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114901.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 355aa    MW: 40347.7 Da    PI: 8.5808
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114901.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.4e-32195248255
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  XP_009114901.1 195 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 248
                     9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-15192248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-28193248IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23195248IPR006447Myb domain, plants
PfamPF002492.3E-7196247IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSQ PSSTWQRRRP TTDQEDHEEL DLGFWRRALD SRTSSLVSNS  60
SSKTTNNHHH PLEDLSLSNN SHRHHQQIFT SFQFPTQQQQ HLQGFLAHDL NTHLRPIRGI  120
PLYQNPPPHH HHRPPPCFPF DPSSLIPSSS PTPTGINNNS FGTSRVNPNH HNHHQTLNRA  180
RFMPRFPAKR SMRAPRMRWT TTLHARFVHA VELLGGHERA TPKSVLELMD VKDLTLAHVK  240
SHLQMYRTVK TTDKAAASSG DNNSDDWMFD MNRKSRDTDE LTNPLEKSNG RWTNSSGEAR  300
LHGKLIDNVA EIILPSENEI DGKSSSYERM SSEDMSSSNI SGTSPFKPNL EFTLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16196250357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16196250458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.219650.0silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114901.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934911e-148AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240.
GenBankAY0486891e-148AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBankBT0292111e-148BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114901.10.0PREDICTED: probable transcription factor KAN2 isoform X2
RefseqXP_013731608.10.0probable transcription factor KAN2 isoform X4
RefseqXP_022546637.10.0probable transcription factor KAN2 isoform X3
SwissprotQ9C6161e-176KAN2_ARATH; Probable transcription factor KAN2
TrEMBLM4E3A30.0M4E3A3_BRARP; Uncharacterized protein
STRINGBra023254.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.11e-149G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]