PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114894.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HSF
Protein Properties Length: 490aa    MW: 54830 Da    PI: 4.4139
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36391302102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sws+n+nsf+v+d+ +fak++Lpk Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++
  XP_009114894.1  39 FLSKTYDMVDDPATDSIVSWSANNNSFIVWDPPQFAKDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEGFLRGQKHLLKT 124
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k 
  XP_009114894.1 125 ITRRKP 130
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3932123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.26E-3534128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6335128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-193962IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3139128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MDRGNRTKGG SVTMESTEIQ PSPQPQPVAV LTGNAPPPFL SKTYDMVDDP ATDSIVSWSA  60
NNNSFIVWDP PQFAKDLLPK NFKHNNFSSF VRQLNTYGFR KVDPDKWEFA NEGFLRGQKH  120
LLKTITRRKP AHGHGPQQSQ HSIGQNSSVS SCVEVGKFGL KEEVERLKRD KNVLMQELVR  180
LRQQQQSTDN QLQTMVQRLQ GMENRQQQLM SFLAKAVQSP HFLSQFLQQQ NQQNEGSRRI  240
SDTSKKRRFK RDGIVSNNKD SASPDGQIVK YQPPMHEQAK AMFSQLMKME PYKAGDDGFL  300
LGNGTSTTTS TEGTEMEISA NNITGISLQE MPTASEIQSS SSPSGATPEN VTVAEFPTPE  360
EAIPSPDDLS LPEFADMLQE NIAEVPPENF LETNMEDLSP ILDSDLFNND DLPFDIDDIL  420
RDPDLEPSVD DYASLFQDIL MSSPVPDDME VTPVDVTTKD GETEQKQMDN LTQQMGLLSP  480
ETIDLSRQNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-263712827129Heat shock factor protein 1
5d5v_B1e-263712827129Heat shock factor protein 1
5d5v_D1e-263712827129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244249KKRRFK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114894.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892550.0AC189255.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019O20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114894.10.0PREDICTED: heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLM4E3A70.0M4E3A7_BRARP; Uncharacterized protein
STRINGBra023258.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.10.0heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]