PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009114726.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 37390.5 Da PI: 5.3306 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.1 | 4.8e-19 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W++ ++ ++R++k+c++rw +yl XP_009114726.1 14 KGPWTPEEDQKLIDYIHKHGHGSWRALPKLADLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l XP_009114726.1 67 RGKFSAEEEQTILHLHSILGNK-WSAIATHLQ-GRTDNEIKNFWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.605 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-31 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-18 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.82E-12 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.697 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.61E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGRSPCCDEN GLKKGPWTPE EDQKLIDYIH KHGHGSWRAL PKLADLNRCG KSCRLRWTNY 60 LRPDIKRGKF SAEEEQTILH LHSILGNKWS AIATHLQGRT DNEIKNFWNT HLKKKLIQMG 120 IDPVTHQPRT DLFASLPQLI ALANLKDLIE QTSQFSSIQA EAAQLAKLQY LNGMLNSSAS 180 LSNNNNNSPS SILDIDQNHA MNLLNSMVSW NKEHNSKFNP ALELEAEDQN QGLFPIGSII 240 DSTTQLLQQQ QYHLNNSPIE QPSQDQDQDQ DHDDPSSWIL PSLIDNSPKN AMSSLPYNNP 300 TDASSSSSYG AGEGASLYWP DFCFDESLIN DIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00180 | DAP | Transfer from AT1G34670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_009114726.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY519560 | 0.0 | AY519560.1 Arabidopsis thaliana MYB transcription factor (At1g34670) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013589811.1 | 0.0 | PREDICTED: myb-related protein 330 | ||||
Swissprot | Q9S9Z2 | 0.0 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0D3CRR8 | 0.0 | A0A0D3CRR8_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6GM25 | 0.0 | A0A3P6GM25_BRAOL; Uncharacterized protein | ||||
STRING | Bo6g044070.1 | 0.0 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 1e-168 | myb domain protein 93 |
Publications ? help Back to Top | |||
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