PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114575.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 516aa    MW: 56856.7 Da    PI: 6.5785
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114575.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.5e-31279337259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  XP_009114575.1 279 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRSILITTYEGNHNHP 337
                     7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-34263339IPR003657WRKY domain
SuperFamilySSF1182904.71E-28271339IPR003657WRKY domain
PROSITE profilePS5081129.838273339IPR003657WRKY domain
SMARTSM007748.1E-38278338IPR003657WRKY domain
PfamPF031068.0E-27280337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MFRFPVSLGG QGDNLKHTQP SDEQHHRPIM DEVDFFRSEK RDDQNVITEE THRLHVKREN  60
SRVDDDDYRS MGINTGLNLL TANTGSDESL VDDGLSVDME EKRTKIENTQ LREELKKSNE  120
ENQRLKEMLS QTTNNFNSLQ MQLVAVMRQE EDHHHLARIE SKDKDTNRHE APEMVPRQFI  180
DLGLPSAEVS SDERIKVRSR SPPSLLEDSS SRQRAKRVLE IEESPENESN GWGNPSKVSK  240
HNASSSNGNG NAIDQSAADA TMRKARVSVR ARSEAPMLSD GCQWRKYGQK MAKGNPCPRA  300
YYRCTMAVGC PVRKQVQRCA EDRSILITTY EGNHNHPLPP AAMYIASTTT AGASMLLSGS  360
AMSNQDGLMN PTNLFARTML PCSSSMXTIS ASAPFPTITL DLTESASNVN GPTNNNPLMQ  420
FSQRSGLAEL NQSGLPQMMG QALYYNQQQS KFSGLHIPSQ SLNAGESVNA AMATNPNFAA  480
ALAAAITSII NGSSNRQNGS SNSSNNNVTT SSGDRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22265341176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114575.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841100.0FJ384110.1 Brassica napus cultivar Westar WRKY transcription factor 42 (WRKY42) mRNA, WRKY42-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114575.10.0PREDICTED: LOW QUALITY PROTEIN: WRKY transcription factor 42-like
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLA0A397Y3W20.0A0A397Y3W2_BRACM; Uncharacterized protein
STRINGBo9g078130.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein