PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114337.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 286aa MW: 31963.2 Da PI: 9.5344

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.3	1.8e-15	85	136	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P++ ++K + a+i+ A+++Ik+L+ XP_009114337.1 85 QRITHIAVERNRRRQMNQHLSVLRSLMPQP---FAQKGDQASIVGGAIDFIKELE 136 799*************************...9****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.15E-14	83	139	No hit	No description
SuperFamily	SSF47459	9.81E-17	83	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.739	84	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.0E-13	85	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-14	86	149	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-11	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MTLEALTSNG LLNFVLSETL SPTSENDIID LEPPPENGII VSKNTVPVIS HQEPSSRQLP 60 PARRGKKRKR RKPRVCKNEE EAENQRITHI AVERNRRRQM NQHLSVLRSL MPQPFAQKGD 120 QASIVGGAID FIKELEQQLL SLEAQKLQKA QTNQTGSSST SQDSNGEREN AHQPCSLSLS 180 HFFLHSYDPS QENRVGTTSS VSTAMEDLEV TLIETHANIK ILSRRRGFRW TTVATTGPPQ 240 LSRLMAALQS LSLSVLHLSV TTLDTFAIYS ISTKVRFLIL DFYAHA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	68	RRGKKRK
2	62	70	RRGKKRKRR
3	65	70	KKRKRR
4	65	71	KKRKRRK
5	65	72	KKRKRRKP
6	66	71	KRKRRK
7	67	73	RKRRKPR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:17088607}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114337.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189314	0.0	AC189314.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034P04, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114337.1	0.0	PREDICTED: transcription factor bHLH71-like isoform X3
Swissprot	Q56XR0	1e-133	BH071_ARATH; Transcription factor bHLH71
TrEMBL	A0A397Y2Z8	0.0	A0A397Y2Z8_BRACM; Uncharacterized protein
STRING	Bra017533.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46690.1	2e-95	beta HLH protein 71

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]