PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114284.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 294aa    MW: 33345.4 Da    PI: 4.8685
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114284.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20149199255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp+++g   r++lg+f++a eAa+a+++a+ +l+g
  XP_009114284.1 149 HYRGVRQRP-WGKFAAEIRDPNKRG--SRIWLGTFDSAIEAARAYDQAAFRLRG 199
                     8********.**********96655..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.01E-31148207No hitNo description
Gene3DG3DSA:3.30.730.102.0E-32148208IPR001471AP2/ERF domain
SMARTSM003808.3E-37149213IPR001471AP2/ERF domain
PROSITE profilePS5103224.144149207IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22149209IPR016177DNA-binding domain
PfamPF008472.0E-14149199IPR001471AP2/ERF domain
PRINTSPR003671.6E-13150161IPR001471AP2/ERF domain
PRINTSPR003671.6E-13189209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MANPSEASAL RFIEKHLLDE LSPVATDRWM IHESAATESS SDSSPTIFGS PAAPIEFSEF  60
ENKPEIIDLS TPRLISSPFE FDSEVSVSDF DFKPSYQTGN QFEPEIKTQS NRNPPSLKIS  120
VPTKTEWIQF DPQPEVTKPK QAIAEEKKHY RGVRQRPWGK FAAEIRDPNK RGSRIWLGTF  180
DSAIEAARAY DQAAFRLRGS KAILNFPLEV GKWKTRSDAD GEKKRKRDDE LEDVTVVEKV  240
LKTEQNVDGK ETFPLVKSDL TELYDWDLTG FLNFPLLSPL SPRPSFNYSE LTVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-30148210466ATERF1
3gcc_A7e-30148210466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.59191e-106leaf
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114284.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1553470.0AC155347.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH093K03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114284.10.0PREDICTED: ethylene-responsive transcription factor 5-like
SwissprotO803411e-140EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLM4DLW20.0M4DLW2_BRARP; Uncharacterized protein
STRINGBra017493.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-126ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]