PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009114197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 408aa MW: 46560.3 Da PI: 6.4205 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.5 | 7.7e-51 | 51 | 176 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp++++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ XP_009114197.1 51 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPAMAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSES 144 79***************************.89***************888889****************************************** PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +glkktLvfy+g+apkg++t+W+m+eyrl XP_009114197.1 145 ARSIGLKKTLVFYSGKAPKGTRTSWIMNEYRL 176 ******************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 56.344 | 50 | 197 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.88E-56 | 50 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.3E-25 | 52 | 176 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 408 aa Download sequence Send to blast |
MAIVSSTTST MTMSNQVNNN SDKGIEEDAH RHENHAQNDD EADDHDHDMV MPGFRFHPTE 60 EELIEFYLRR KVEGKRFNVE LITFLDLYRY DPWELPAMAA IGEKEWYFYV PRDRKYRNGD 120 RPNRVTTSGY WKATGADRMI RSESARSIGL KKTLVFYSGK APKGTRTSWI MNEYRLPHHE 180 TEKYQKAEIS LCRVYKRPGV EDHLSLPRSL STRHHNHTSS SSRLALRQQQ QHHSSSSNHS 240 DNNLNNNNNP EKLSTEYSGD GSTITTTNSN SDVTIALANQ NTYRPMPYGV SNTPMISTSN 300 KEDDENAIVD DLQRLVNYQI SDGGSNINHQ YYQIAQQFHN QQELNANALQ LVAGATTVAL 360 TPQTQAALAM NMITAGTIPN SALWDLWNPL VPDGNRDHYT DTLFKEFN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-57 | 41 | 197 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-57 | 41 | 197 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-57 | 41 | 197 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-57 | 41 | 197 | 8 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-57 | 41 | 197 | 8 | 165 | NAC domain-containing protein 19 |
4dul_B | 3e-57 | 41 | 197 | 8 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aerial organs in early stages of seedling development. {ECO:0000269|PubMed:17653269}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00257 | DAP | Transfer from AT2G02450 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009114197.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189452 | 0.0 | AC189452.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB072E02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114197.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like | ||||
Swissprot | Q9ZVP8 | 0.0 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | A0A397Y3X9 | 0.0 | A0A397Y3X9_BRACM; Uncharacterized protein | ||||
STRING | Bra017416.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5436 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02450.2 | 0.0 | NAC domain containing protein 35 |
Publications ? help Back to Top | |||
---|---|---|---|
|