PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114182.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 373aa MW: 42059.3 Da PI: 6.898

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114182.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.2	1.2e-19	10	53	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+ rq tf+kR+ngilKKA+ELS+LCd++ +++fs+ gk XP_009114182.1 10 KLENTNGRQATFAKRKNGILKKANELSILCDIDLILLMFSPGGK 53 6799*************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	23.605	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	6.1E-28	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.27E-24	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	2.31E-24	2	84	No hit	No description
PRINTS	PR00404	2.7E-17	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.4E-18	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-17	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.7E-17	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MGRVKLKIKK LENTNGRQAT FAKRKNGILK KANELSILCD IDLILLMFSP GGKASLCCGR 60 RSSIEEVISK FSQVTPEERT KKKVESLETL KKTFLKLDHT VNIRELIASS NSTTEDLSTQ 120 ASILQGRISE IHGRLSYWTE VDKINNVDHL GQLEISIRQS LDQLRAHKEH LGQQQQQQAM 180 QIENANFVKD WSTCSLQDGI EIPLEQQLQS MSWVLNSDNT TNIITEEHNP IPKREVECSA 240 SSSFGSYPGY FGTGKSSETS FLDELNTTNG DIKPQLCTNN NIIPYNPNIM QNDIKHHQTY 300 PPPPLPHPPV FNLPVNQREY HMNGFFEAPP QPHGTSAYNN NNNQARFGSS SNSLPCSISM 360 LDEYLFSQMQ QPN

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MGRVKLKIKK LENTNGRQAT FAKRKNGILK KANELSILCD IDLILLMFSP GGKASLCCGR  60
RSSIEEVISK FSQVTPEERT KKKVESLETL KKTFLKLDHT VNIRELIASS NSTTEDLSTQ  120
ASILQGRISE IHGRLSYWTE VDKINNVDHL GQLEISIRQS LDQLRAHKEH LGQQQQQQAM  180
QIENANFVKD WSTCSLQDGI EIPLEQQLQS MSWVLNSDNT TNIITEEHNP IPKREVECSA  240
SSSFGSYPGY FGTGKSSETS FLDELNTTNG DIKPQLCTNN NIIPYNPNIM QNDIKHHQTY  300
PPPPLPHPPV FNLPVNQREY HMNGFFEAPP QPHGTSAYNN NNNQARFGSS SNSLPCSISM  360
LDEYLFSQMQ QPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	3e-12	1	92	1	90	MEF2 CHIMERA
6byy_B	3e-12	1	92	1	90	MEF2 CHIMERA
6byy_C	3e-12	1	92	1	90	MEF2 CHIMERA
6byy_D	3e-12	1	92	1	90	MEF2 CHIMERA
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269\|PubMed:12949148}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114182.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ446459	0.0	DQ446459.1 Arabidopsis thaliana clone pENTR221-At2g03060 MADS-box family protein (At2g03060) mRNA, complete cds.
GenBank	DQ652954	0.0	DQ652954.1 Arabidopsis thaliana clone 0000017365_0000012150 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114182.1	0.0	PREDICTED: agamous-like MADS-box protein AGL30
Swissprot	Q1PFA4	0.0	AGL30_ARATH; Agamous-like MADS-box protein AGL30
TrEMBL	M4DLM3	0.0	M4DLM3_BRARP; Uncharacterized protein
STRING	Bra017404.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.2	1e-163	AGAMOUS-like 30

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]