PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009114112.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 367aa MW: 41127.8 Da PI: 7.0606

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009114112.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.9	1.5e-30	213	268	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W++eLH+rF++ ++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_009114112.1 213 KHRRCWSHELHRRFLNTLKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 268 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.861	210	270	IPR017930	Myb domain
SuperFamily	SSF46689	1.34E-16	211	271	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-26	211	271	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-26	213	268	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-5	215	266	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MINSLSNMKN YNEKRVRCCE YIKALEEERR KINVFQRELP LCLELVTQAI ETYKKEISEA 60 TMENLCGQSE CSEQTTGECG GILDLFRPIK HSSTSLEGEE EEVDADDEHE SNETGLDCDD 120 KNMKSEWLKS VQLWNQPDSV LSKKLERSQQ ETETVVEAIN GNDNGTTSHQ PPCYETSNGK 180 SGDDKSQASI SGRQKMEAEK DISGGSGGIG RRKHRRCWSH ELHRRFLNTL KQLGGPHVAT 240 PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPGQTIPNKR DSQTQHFVVV GGIWVPQASH 300 STANAATAGE TTIGIYGPLQ AEWPSQSNFG RTISEERSRC SNKGIIRCSS PAMSSSTRTK 360 TKDAKLS

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MINSLSNMKN YNEKRVRCCE YIKALEEERR KINVFQRELP LCLELVTQAI ETYKKEISEA  60
TMENLCGQSE CSEQTTGECG GILDLFRPIK HSSTSLEGEE EEVDADDEHE SNETGLDCDD  120
KNMKSEWLKS VQLWNQPDSV LSKKLERSQQ ETETVVEAIN GNDNGTTSHQ PPCYETSNGK  180
SGDDKSQASI SGRQKMEAEK DISGGSGGIG RRKHRRCWSH ELHRRFLNTL KQLGGPHVAT  240
PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPGQTIPNKR DSQTQHFVVV GGIWVPQASH  300
STANAATAGE TTIGIYGPLQ AEWPSQSNFG RTISEERSRC SNKGIIRCSS PAMSSSTRTK  360
TKDAKLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009114112.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114112.1	0.0	PREDICTED: myb family transcription factor EFM-like
Swissprot	Q9LS00	1e-163	HHO1_ARATH; Transcription factor HHO1
TrEMBL	A0A397XXY1	0.0	A0A397XXY1_BRACM; Uncharacterized protein
TrEMBL	M4DLG8	0.0	M4DLG8_BRARP; Uncharacterized protein
STRING	Bra017349.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	1e-164	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]