PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009114008.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SBP
Protein Properties Length: 390aa    MW: 43605.6 Da    PI: 8.221
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009114008.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.71e-40159235177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++
  XP_009114008.1 159 RCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 235
                     6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-33153221IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.983157234IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-38158237IPR004333Transcription factor, SBP-box
PfamPF031102.8E-31160233IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MECNAQCDWE NLISFGTSSA EIPRKLRPMD WETDEFDCSF PTAACGSSSG LAHAFSKSSK  60
STSISSSSPE ARTLNFTSEE LGSSEEFAKG INTSPSLELS FGSSDPVLGL KLGKRTYFED  120
FWEVENAARG SALPVSLVSS SASPVKKTKS VPQKVQTPRC QVEGCNLDLS SAKDYHRKHR  180
ICENHSKFPK VVVSGVERRF CQQCSRFHCL SEFDEKKRSC RRRLSDHNAR RRKPNPGGTY  240
EGKQQMDFVW NRFALIHPRT EEKFLWPNPK PIPSRGLIQQ PAKTRSAELF SKEKVTISSS  300
MGASQDLDGA LSLLSNSTAW VPSDQPTRFS LDHHPTTNLQ PTAHRSVTHL STVSDYWQPD  360
PPAVEGPTDL HRNGVGQFNE NYFSLNQFYN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-261602331184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1215232KKRSCRRRLSDHNARRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009114008.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009114006.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_009114007.10.0PREDICTED: squamosa promoter-binding-like protein 2
RefseqXP_018510423.10.0PREDICTED: squamosa promoter-binding-like protein 2
SwissprotQ9S8400.0SPL2_ARATH; Squamosa promoter-binding-like protein 2
TrEMBLM4EFB60.0M4EFB6_BRARP; Uncharacterized protein
STRINGBra027478.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.30.0squamosa promoter binding protein-like 2