PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009114006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 390aa MW: 43605.6 Da PI: 8.221 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.7 | 1e-40 | 159 | 235 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +CqvegC+ dls+ak+yhr+h++Ce hsk p+v+vsg+e+rfCqqCsrfh lsefDe+krsCrrrL++hn+rrrk++ XP_009114006.1 159 RCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLSDHNARRRKPN 235 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-33 | 153 | 221 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.983 | 157 | 234 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-38 | 158 | 237 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-31 | 160 | 233 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 390 aa Download sequence Send to blast |
MECNAQCDWE NLISFGTSSA EIPRKLRPMD WETDEFDCSF PTAACGSSSG LAHAFSKSSK 60 STSISSSSPE ARTLNFTSEE LGSSEEFAKG INTSPSLELS FGSSDPVLGL KLGKRTYFED 120 FWEVENAARG SALPVSLVSS SASPVKKTKS VPQKVQTPRC QVEGCNLDLS SAKDYHRKHR 180 ICENHSKFPK VVVSGVERRF CQQCSRFHCL SEFDEKKRSC RRRLSDHNAR RRKPNPGGTY 240 EGKQQMDFVW NRFALIHPRT EEKFLWPNPK PIPSRGLIQQ PAKTRSAELF SKEKVTISSS 300 MGASQDLDGA LSLLSNSTAW VPSDQPTRFS LDHHPTTNLQ PTAHRSVTHL STVSDYWQPD 360 PPAVEGPTDL HRNGVGQFNE NYFSLNQFYN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-26 | 160 | 233 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 215 | 232 | KKRSCRRRLSDHNARRRK |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed constitutively during plant development, weak increase during flowering. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:14573523}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_009114006.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157 (Probable). Up-regulated by Turnip mosaic virus P1/HC-Pro protein, that acts as an antagonist of miR156. {ECO:0000269|PubMed:12202040, ECO:0000269|PubMed:12586064, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009114006.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_009114007.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_018510423.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 | ||||
Swissprot | Q9S840 | 0.0 | SPL2_ARATH; Squamosa promoter-binding-like protein 2 | ||||
TrEMBL | M4EFB6 | 0.0 | M4EFB6_BRARP; Uncharacterized protein | ||||
STRING | Bra027478.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6562 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43270.3 | 0.0 | squamosa promoter binding protein-like 2 |