PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009113678.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 297aa    MW: 32341.9 Da    PI: 9.431
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009113678.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.62.7e-381777262
          zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                    ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  XP_009113678.1 17 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 77
                    56789*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.1E-332075IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-272175IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9012175IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102359IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQSKNMIVSP SHQQQPPQPQ LKCPRCDSSN TKFCYYNNYS LSQPRHFCKA CKRYWTRGGT  60
LRNVPVGGSY RKNKRVKRPA TTTAASTAST TTSSSPNNPH HQISHFPSMN HHPLFYGLSD  120
HVSSCNSLPM FPSRFSDPPK TSSGLEGEFP SSGFNGLGLG LPHHMSHDQT INGSFINSST  180
TNKPFLPSSL FGSSVSSSSS TLLRHAHKPM NNNGEMMGQS HLQTLASLQD LHVGGNNEDV  240
NKEGKLVEIS GDMNGFMSSS SLDPSNYHNI WNNASVSSGA WLDPTNNIVG SSLTSLI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.291657e-37leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009113678.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530650.0AK353065.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-D16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113678.10.0PREDICTED: dof zinc finger protein DOF1.4
SwissprotQ9FZA41e-139DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLM4EVQ80.0M4EVQ8_BRARP; Uncharacterized protein
STRINGBra032891.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47092650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-130Dof family protein